PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031528 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 27897.2 Da PI: 8.2509 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.5e-09 | 60 | 85 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++r+G C y ++C+++H+ Lus10031528 60 PGEPDCIYYLRNGVCGYASNCRYNHP 85 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 109 | 133 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG +C+F+H++ Lus10031528 109 EPDCGYYLKTGTCKYGTTCRFHHPK 133 789********************96 PP | |||||||
3 | zf-CCCH | 41 | 3.2e-13 | 153 | 178 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f++rtG Ck+G+ CkF+H++ Lus10031528 153 DEKPCSFYMRTGSCKFGGACKFHHPQ 178 5789********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.652 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-6 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-5 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 109 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 111 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-7 | 150 | 179 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-11 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 155 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MPDTNISGSN QKQQVKSNGG SNHSSDNIEE AIRRLKIQDN HDQNGGGGDV TEPGSYPDRP 60 GEPDCIYYLR NGVCGYASNC RYNHPNQHAP PLAKGSKGGD QELPERAGEP DCGYYLKTGT 120 CKYGTTCRFH HPKDRNGAGP VSYNRLGLPM RQDEKPCSFY MRTGSCKFGG ACKFHHPQPP 180 PAAAPLEPGG IPLSGLSTYG TSTGSPMIPR LPYMSAPPRF DSTPAFAPVY ISPPSQGGWN 240 NYVIRVASSL CLMSLFQI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031528 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528968.1 | 2e-83 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Swissprot | Q94AD9 | 3e-62 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | B9SSJ9 | 5e-82 | B9SSJ9_RICCO; Zinc finger protein, putative | ||||
STRING | Lus10031528 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 3e-60 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10031528 |
Publications ? help Back to Top | |||
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