PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10031527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 171aa MW: 19008.4 Da PI: 9.3335 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.9 | 5.4e-11 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC+++ +G+Ck+G +C+F H++ Lus10031527 61 GQALCPNYITYGICKFGTSCRFDHPF 86 789*********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.7E-4 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.173 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.02E-6 | 61 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 64 | 84 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MPAFHEHRDL QIWIRLQVPS PKGEKNTTAA RVKTDEPPPL VGYQPHHQLH LHFNLVFAKQ 60 GQALCPNYIT YGICKFGTSC RFDHPFTGYP YNYSFAIPPP LPMLDSSMVT SYPRMVTSSP 120 SYNVYNGSAR NINQQHQMNN AGANNKKTTA PTPTPTTPPD ETTTNAAPPR * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10031527 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10031527 | 1e-124 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16540.2 | 5e-09 | zinc finger nuclease 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10031527 |