PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 34110.1 Da PI: 6.6466 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.001 | 155 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ +++++H+++ H Lus10031446 155 FYCDLCKKQYKLAMEFEVHLSSydH 179 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 6.3E-18 | 58 | 103 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.921 | 60 | 105 | IPR000467 | G-patch domain |
Pfam | PF01585 | 1.0E-15 | 61 | 101 | IPR000467 | G-patch domain |
PROSITE pattern | PS00028 | 0 | 157 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDHRRYNSDH ERDKRRLDAD QESVIEDLGQ EFCLPINFRP TENVDLENVE QASLETKLTS 60 SNVGFRLLQK MGWKGKGLGK DEQGIVEPIK SGIRDAKLGL GKQEEDDYFT AEENIQRKKL 120 DIEVEETEEN AKKREVLAER DKKIQTEVQE IRKVFYCDLC KKQYKLAMEF EVHLSSYDHN 180 HRKRFKEMRE MHGSSSRDDR QKRELQRQER EMAKFAQMAD AHKQQQQLEL QQEESGSAAK 240 TVTSSLGDQD QRKTLKFGFS SKSSSSKKVT LTASAAKRPK VVLASVFKDD SEEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031446 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621267.1 | 1e-159 | G patch domain-containing protein 8-like isoform X3 | ||||
Refseq | XP_021621268.1 | 1e-159 | G patch domain-containing protein 8-like isoform X3 | ||||
TrEMBL | A0A2C9VHJ2 | 1e-158 | A0A2C9VHJ2_MANES; Uncharacterized protein | ||||
STRING | Lus10031446 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5977 | 24 | 28 |
Link Out ? help Back to Top | |
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Phytozome | Lus10031446 |