PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 207aa MW: 22900.1 Da PI: 8.3839 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.1 | 4.9e-29 | 8 | 66 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt...aaalkCaACgCHRnFHRrevee 59 +YkeCl+NhAaslG++a+DGCgEf+ s +++++ a++l+CaACgCHRnFHR+ +++ Lus10031315 8 EVYKECLRNHAASLGSYATDGCGEFTLSFSSSSSssvATSLQCAACGCHRNFHRKVNNN 66 68***********************98865553334589****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.7E-24 | 9 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 10 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-24 | 10 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.341 | 10 | 63 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.76E-14 | 96 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-26 | 102 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.9E-28 | 109 | 168 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEGEVDTEVY KECLRNHAAS LGSYATDGCG EFTLSFSSSS SSSVATSLQC AACGCHRNFH 60 RKVNNNHNTN LLLTTAAIEQ DHQMASVVRK NNMSSYRGDL GSGLGSSGKR HRTKFTTEQK 120 EKMTEFAEKI GWRLTRVANK EEDEVERFCR GVGISRQVFK VWMHNHKNSS SSSTTNTTTN 180 NNYDSSNDYH NNVASFSTRT SSLTTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-20 | 109 | 173 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031315 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035531.1 | 5e-62 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9LHF0 | 7e-39 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A2K1Y8K4 | 1e-60 | A0A2K1Y8K4_POPTR; Uncharacterized protein | ||||
STRING | Lus10031315 | 1e-151 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 7e-32 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Lus10031315 |
Publications ? help Back to Top | |||
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