PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 462aa MW: 50832.9 Da PI: 8.3278 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.4e-06 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Lus10031314 71 YVCEICNQGFQRDQNLQMHRRRH 93 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.7e-05 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Lus10031314 148 WVCDKCNKGYAVQSDYKAHLKTC 170 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.77E-6 | 70 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.023 | 71 | 89 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.9E-5 | 139 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.77E-6 | 143 | 168 | No hit | No description |
SMART | SM00355 | 49 | 148 | 175 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MFCSNKNSSS SPPSDPFSSS SLDNNNCHES SSVAAAATSA AKRKRRPAGT PDPDAEVVSL 60 SPRTLMESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRESPVVKKR VFVCPEPSCL 120 HHDPCHALGD LVGIKKHFRR KHSNQKQWVC DKCNKGYAVQ SDYKAHLKTC GTRGHSCDCG 180 RVFSRVESFI EHQDACTMGR QSHSPNFQQQ QQQPTACLSR TASSPSPSAE TAPWPMLVPS 240 PRQHHHQQQP PPHPPPQLDH HQQRGGGGRA ATSAFMSLPT ISTTTITESR GCEIHNLDLQ 300 LASSSSAVAA AAADHDDHSS AADAAATQLH LSVGSVSNTN HPIREVDARE EIRLAIAEKA 360 YAEEVRKEAK RQIQLAEEEF ANAKRTRQRA QAELDKAEAL KEHAMKQMNT TILQLTCASC 420 RQKLLMRQPG AAADENSSLV LSYVSSGITE QGEVMEKEAI V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-17 | 144 | 196 | 3 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 2e-17 | 144 | 196 | 3 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031314 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087165 | 4e-40 | BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020240417.1 | 0.0 | zinc finger protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-145 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A151RFD5 | 1e-180 | A0A151RFD5_CAJCA; Zinc finger protein MAGPIE | ||||
STRING | Lus10031314 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1769 | 32 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-108 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10031314 |
Publications ? help Back to Top | |||
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