PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031245
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family EIL
Protein Properties Length: 586aa    MW: 65317.3 Da    PI: 5.3533
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031245genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3435.26.3e-133383771317
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  eel++rmwkd+++l+r+ker++ +   ++ a++++k +++++qa+rkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++raWWkek
  Lus10031245  38 EELERRMWKDRVKLQRIKERQRISA--QQ-AAEKQKPKHTSDQAKRKKMSRAQDGILKYMLKLMEVCQARGFVYGIIPEKGKPVSGASDNIRAWWKEK 132
                  8*****************9999754..44.599***************************************************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS
         EIN3  99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196
                  v+fd+ngpaai+ky+a++l+++++++   ++ ++++ l++lqD+tlgSLLs+lmqhcdppqr++plekgv+pPWWPtG+e+wwg+lgl+  q  ppyk
  Lus10031245 133 VKFDKNGPAAIAKYEAECLAMNEGDNA--RQGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWGKLGLPSGQT-PPYK 227
                  ********************9988877..789999******************************************************9998.9*** PP

                  -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.......XXXX..XXXXXXXXXXXXXXXX CS
         EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.......slrk..qspkvtlsceqkedve 285
                  kphdlkk+wkv+vLtavikhmsp+i++ir+++rqsk+lqdkm+akes+++l+vl++ee+ +++ s+++           +  ++++  +s+++++dve
  Lus10031245 228 KPHDLKKVWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLAVLSREESVIRQPSSDNGtsgitevP--RggRKKQAAVSDDSDYDVE 323
                  *******************************************************************4444566532..245899999********** PP

                  XXXXXX.XXXXXXXXXX.......................XXXXXXXXXXXXXXX CS
         EIN3 286 gkkeskikhvqavktta.......................gfpvvrkrkkkpses 317
                  g ++   + +++++  +                         +  rkrk+ p+++
  Lus10031245 324 GVDDGVGSVSSNDSMSNqpmdveplgnlrddsphpvqkkeRREKPRKRKR-PRDK 377
                  66666656666666655778889999999966554444433333333332.2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.1E-12638285No hitNo description
Gene3DG3DSA:1.10.3180.109.9E-72160293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.23E-62166288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGELEEIAAD ICSEIDADEL KCDNLAEKDV SDEEIEPEEL ERRMWKDRVK LQRIKERQRI  60
SAQQAAEKQK PKHTSDQAKR KKMSRAQDGI LKYMLKLMEV CQARGFVYGI IPEKGKPVSG  120
ASDNIRAWWK EKVKFDKNGP AAIAKYEAEC LAMNEGDNAR QGNSQSVLQD LQDATLGSLL  180
SSLMQHCDPP QRKYPLEKGV PPPWWPTGNE DWWGKLGLPS GQTPPYKKPH DLKKVWKVGV  240
LTAVIKHMSP NIAKIRRHVR QSKCLQDKMT AKESAIWLAV LSREESVIRQ PSSDNGTSGI  300
TEVPRGGRKK QAAVSDDSDY DVEGVDDGVG SVSSNDSMSN QPMDVEPLGN LRDDSPHPVQ  360
KKERREKPRK RKRPRDKSKD SEQQPGPSTN DGHFLLEQRA SLPDMDHSHI QPLEPQMHAV  420
DPEINTNVPT MPLGEGLEGE PNFIAPEFNY LPNIPLGSGE NIRLDGRPQL YPLAQSSDMF  480
HGSSYDFYAP TVNFGPAHGV EQQTHLPVDA SHIRQEGDGF QVPALPMNGN EIPGGDLQNF  540
AKDIFPSGQD RYLGSPFDSV PSDFGDFSSP FDFDIDIDLL KCYGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-741652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360373KKERREKPRKRKRP
2366374KPRKRKRPR
3367373PRKRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299248.20.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLB9GMA10.0B9GMA1_POPTR; Uncharacterized protein
STRINGLus100312450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-166ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]