PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030969
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 152aa    MW: 15590.2 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030969genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35.4e-133357125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL +P GA+sV+Ca+C++V
  Lus10030969 33 CSGCRNLLLFPVGATSVCCAVCNAV 57
                 ************************9 PP
2zf-LSD146.75.2e-157296125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Lus10030969 72 CGGCHTLLMYIRGATSVQCSCCHTV 96
                 ************************9 PP
3zf-LSD141.81.8e-13110134125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  Lus10030969 110 CGNCRMLLMYQYGARSVKCAVCNFV 134
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.6E-123060IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-103357IPR005735Zinc finger, LSD1-type
SuperFamilySSF486959.63E-533131IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.109.2E-447131No hitNo description
TIGRFAMsTIGR010539.3E-156998IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-127296IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.2E-12107137IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12110134IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPPP PPAANGGQSQ LVCSGCRNLL LFPVGATSVC CAVCNAVTAV  60
PPPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTVNLAL EANQVAHVNC GNCRMLLMYQ  120
YGARSVKCAV CNFVTSVGAT ASTPEQKFST S*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.13e-91protein LOL1
RefseqXP_021593716.13e-91protein LOL1
RefseqXP_021593717.13e-91protein LOL1
RefseqXP_021593718.13e-91protein LOL1
SwissprotQ93ZB15e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS87e-90A0A2C9UHS8_MANES; Uncharacterized protein
TrEMBLA0A2G5CPJ29e-90A0A2G5CPJ2_AQUCA; Uncharacterized protein
STRINGLus100309691e-103(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-66lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]