PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030908
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 1279aa    MW: 141066 Da    PI: 7.0668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030908genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09367415355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10030908 367 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 415
                  58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17362434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.85E-10362419No hitNo description
PROSITE profilePS5088815.51364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17365433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513757.574574604IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-8578666IPR011990Tetratricopeptide-like helical domain
PfamPF015350.008579603IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.802605635IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0018607637IPR002885Pentatricopeptide repeat
PfamPF015351.3E-4607632IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.95636670IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.2E-7638667IPR002885Pentatricopeptide repeat
PfamPF130414.8E-8638683IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.026672706IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-8704765IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.333707737IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.334738772IPR002885Pentatricopeptide repeat
PfamPF130415.6E-8738768IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.3E-8740769IPR002885Pentatricopeptide repeat
PfamPF130411.5E-8769815IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.9E-6771804IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.862773803IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.226804838IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.046839869IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0011844871IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.704870904IPR002885Pentatricopeptide repeat
PfamPF130412.0E-11870917IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-7872904IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.149905939IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.188940970IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-4945971IPR002885Pentatricopeptide repeat
PfamPF015351.0E-4945968IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.3739711005IPR002885Pentatricopeptide repeat
PfamPF130412.6E-99711018IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.5E-89731007IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.82610061041IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.72810421072IPR002885Pentatricopeptide repeat
PfamPF015353.1E-410451069IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-410461069IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.6E-811021128IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.4411081142IPR002885Pentatricopeptide repeat
PfamPF144327.8E-4111441268IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1279 aa     Download sequence    Send to blast
MEMEISEKDK LELEKRDNVD NPMNYQSSGG GLSSDWRFGG GANVANSALG GAASCSSAAM  60
GEESFGGPAG IWDHQASSQN IGFCDLINAP GTPLGMVKGG GALGMGWNPH SSMSRESGIF  120
LPNPHGILPP SLSPFPADPA FIERASRFSC FSGGGQFSDM AHPFAMSEAM GLYSRGGGMI  180
PVPPQEVFAG IGSKSLSGQR NMMMNPGECS TEVTDASLRM DHHAKTEESP LKSERRSESV  240
VRSQDEVKPG VVRSGNDSDE AEFSGGGGQD DATMLEGNGG KLSLKGLDSR KRKRNGQDTE  300
HDAGKGSQQS GESTKDGSEI HQKGGKNPSP AANKASGKNG KQGGSQVSDP AKEEYIHIRA  360
RRGQATNSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RMDFNSLEGL LTKDILSSRA IPSANLPFSP EMPMPYPPLH PSQSGLIPTG  480
FPAMANHSDI LRRTIGSQLA SSSGEFKDPA QQLPSSWNEE LHNVIQMYGA AGPQDSQEIA  540
GTKLFLQLVY CETRNQSQVK KLHCHILRTL LNPEPFLSNN LINAYGQLRN PSYARNVFDE  600
MPQRTPFSWN TLLSAYSKSG DLSQMQEIFN LMPITDGVSW NSLISGYANH GSVDEAVKAY  660
GMMLRNGAGN VNRITFSTML ILCSSRERIE LGRAIHGQIV RLGFRDYVFV GSALVDMYCK  720
IGSVHEAVRS FDEIRERNVV MYNTLITGLL RNGMVEDAKR IFRSMKDRDS ITWTTMITGF  780
VQNGLDRDAL DLFREMRVAE MEIDQFTFGS VLTACGGIKA LHEGKQVHAF IVRKEFKGNV  840
FVDSALLDMY CKSKNVSYAE AVFRRMKVRN VVSWTAMLVG YGQNGFSEQA IRIYSEMQRN  900
GIKPEDFTLG SVISSCANLA SLEEGTQFHA RALMSGLISS ITVSNALITL YGKCGSVEEC  960
DRLFHEMKFR DEVSWTAMVS GYAQFGKAEK TIELFEEMLR QGLKPDSVAF IGVLSACSRA  1020
GLVERGNWYF ESMSRDHGIN PSCDHYTCMI DLLSRAGRLE EAKDFIHKMP FCPDAIGWAT  1080
LLSSCRFHSN LEIGKWAAES LLEVDPNNPA AYILLTSIYA SRGEWNDVAQ LRRGMREKGL  1140
RKDPGCSWIK FKNKVYIFSA DDFSSPFYDQ INAKLENLYE KMVQMGYVPD ASSVLHDVEE  1200
SEKIKMLGHH SEKLAIAFGL LFIPHGCPIR VIKNLRVCKD CHTVTKYISK ITQREILVRD  1260
SARFHLFKDG ACSCGDFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-6860910826337PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030908
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314911.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465895.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465896.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465897.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465898.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465899.10.0putative pentatricopeptide repeat-containing protein At1g68930
SwissprotQ9CAA80.0PP108_ARATH; Putative pentatricopeptide repeat-containing protein At1g68930
TrEMBLA0A1Q3ATJ30.0A0A1Q3ATJ3_CEPFO; HLH domain-containing protein/PPR domain-containing protein/PPR_2 domain-containing protein/DYW_deaminase domain-containing protein (Fragment)
STRINGLus100309080.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-90bHLH family protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]