PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 105aa MW: 12065.7 Da PI: 8.9105 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 100.4 | 3.9e-31 | 7 | 97 | 71 | 159 |
YABBY 71 lleelkveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++e++++ ++++ s +e++ s ss l +enede++ r ++++PPekrqr+Psaynrfikeei+r+ka+nP++ h+eafs+aakn Lus10030892 7 VKEQKEDGNHQVGSLYEEKGSLLFMDSSPPLlvtsDENEDEDINR--KINKPPEKRQRAPSAYNRFIKEEIKRLKAENPKMVHKEAFSMAAKN 97 556666777788888888888877777777777767788888887..899******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.7E-27 | 38 | 98 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-7 | 50 | 96 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.9E-5 | 52 | 96 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MTILTIVKEQ KEDGNHQVGS LYEEKGSLLF MDSSPPLLVT SDENEDEDIN RKINKPPEKR 60 QRAPSAYNRF IKEEIKRLKA ENPKMVHKEA FSMAAKNVNR NFYV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030892 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498850.1 | 2e-26 | PREDICTED: axial regulator YABBY 4-like isoform X1 | ||||
Swissprot | Q9LDT3 | 3e-27 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A218XWX3 | 2e-26 | A0A218XWX3_PUNGR; Uncharacterized protein | ||||
TrEMBL | A0A2I0IFA8 | 2e-26 | A0A2I0IFA8_PUNGR; Uncharacterized protein | ||||
STRING | Lus10030892 | 4e-71 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-29 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030892 |
Publications ? help Back to Top | |||
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