PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YC | ||||||||
Protein Properties | Length: 149aa MW: 16559.8 Da PI: 9.1263 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 52.8 | 8.7e-17 | 9 | 96 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 e ++ ++++e+P r++ki++ d+dv+++++ea +++++ elf+ l+ +s a e+kr+ +k + aav+r + + dfl+d p Lus10030832 9 E-DATIRQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSAEVASEKKRKIVKIEHLRAAVKRHQpTSDFLLDSLPA 96 2.345789******************************************************************976489*****9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-19 | 13 | 81 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.21E-17 | 13 | 83 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-19 | 17 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MVEEEEQVED ATIRQQEFPN GRVRKIMRID KDVNKVTSEA LFVVARSTEL FLRFLAEKSA 60 EVASEKKRKI VKIEHLRAAV KRHQPTSDFL LDSLPAPILQ SQEDTGDGAA ARLPREVAPK 120 LLPAGTRRID DFFGKSTSRA STSAENQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030832 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002514923.1 | 1e-51 | negative cofactor 2 complex subunit alpha | ||||
TrEMBL | B9RMF4 | 2e-50 | B9RMF4_RICCO; DNA binding protein, putative | ||||
STRING | Lus10030832 | 1e-102 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-47 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Lus10030832 |