PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YC | ||||||||
Protein Properties | Length: 147aa MW: 16442.6 Da PI: 9.1497 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.2 | 2.7e-16 | 6 | 96 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivprd 99 q+e+ ++++e+P r++ki++ d+dv+++++ea +++++ elf+ l+ +s a e+kr+ +k + aav+r + + dfl++ p++ Lus10030657 6 QVEE-VTIQQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSVEVASEKKRKIVKIEHLRAAVQRHQpTSDFLLESLPTQ 96 3333.347899****************************************************************9976489****999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-17 | 11 | 82 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.1E-19 | 13 | 80 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-19 | 16 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MAEEEQVEEV TIQQQEFPNG RVRKIMRIDK DVNKVTSEAL FVVARSTELF LRFLAEKSVE 60 VASEKKRKIV KIEHLRAAVQ RHQPTSDFLL ESLPTQTQSQ EETGGGAAAR LPREVTPKPM 120 PAGTRRIDDF FGKFTSRAST SAENQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030657 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021639800.1 | 1e-51 | nuclear transcription factor Y subunit C-8-like | ||||
Refseq | XP_021639835.1 | 1e-51 | nuclear transcription factor Y subunit C-8-like | ||||
TrEMBL | A0A2N9HE56 | 5e-50 | A0A2N9HE56_FAGSY; Uncharacterized protein | ||||
STRING | Lus10030657 | 1e-101 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 9e-45 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Lus10030657 |