PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030657
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 147aa    MW: 16442.6 Da    PI: 9.1497
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030657genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.22.7e-16696999
        NF-YC  9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivprd 99
                 q+e+   ++++e+P  r++ki++ d+dv+++++ea  +++++ elf+  l+ +s   a e+kr+ +k   + aav+r + + dfl++  p++
  Lus10030657  6 QVEE-VTIQQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSVEVASEKKRKIVKIEHLRAAVQRHQpTSDFLLESLPTQ 96
                 3333.347899****************************************************************9976489****999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-171182IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-191380IPR009072Histone-fold
PfamPF008081.3E-191679IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAEEEQVEEV TIQQQEFPNG RVRKIMRIDK DVNKVTSEAL FVVARSTELF LRFLAEKSVE  60
VASEKKRKIV KIEHLRAAVQ RHQPTSDFLL ESLPTQTQSQ EETGGGAAAR LPREVTPKPM  120
PAGTRRIDDF FGKFTSRAST SAENQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639800.11e-51nuclear transcription factor Y subunit C-8-like
RefseqXP_021639835.11e-51nuclear transcription factor Y subunit C-8-like
TrEMBLA0A2N9HE565e-50A0A2N9HE56_FAGSY; Uncharacterized protein
STRINGLus100306571e-101(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.19e-45nuclear factor Y, subunit C13