PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030596

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 272aa MW: 30958.2 Da PI: 5.9541

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030596	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203.5	8e-63	17	215	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee...........................ll 72 + +q+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +ll+++ +++ + +++ ++ Lus10030596 17 AEDQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASflpfHLLPTSPDVGLEDEDRnqfgsdatlenhfipitrkfwiailkiVK 114 679******************************************9999999999999887766665789999*************999655 PP YABBY 73 eelkveeenlksn.vekeesastsvssekl.....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 e+++ +++++ s +e++ s ss l enede++ ++++PPekrqr+Psaynrfikeei+r+ka+nP++ h+eafs+aaknWa fP Lus10030596 115 EQKEADNHQVGSSlYEEKGSLLFMDSSPPLlvtsdHENEDEDIN--RKINKPPEKRQRAPSAYNRFIKEEIKRLKAENPKMVHKEAFSMAAKNWAQFP 210 55555555565540445555555566666678844444555555..589********************************************* PP YABBY 165 kihfg 169 ++hf Lus10030596 211 PAHFR 215 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.6E-59	17	214	IPR006780	YABBY protein
SuperFamily	SSF47095	6.15E-9	158	212	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.3E-6	160	213	IPR009071	High mobility group box domain
CDD	cd00084	1.36E-5	170	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSSTTISSQL FDLPAAAEDQ ICYVQCGFCT TILLVSVPCS SLSMVVTVRC GHCTSLLSVN 60 MMKASFLPFH LLPTSPDVGL EDEDRNQFGS DATLENHFIP ITRKFWIAIL KIVKEQKEAD 120 NHQVGSSLYE EKGSLLFMDS SPPLLVTSDH ENEDEDINRK INKPPEKRQR APSAYNRFIK 180 EEIKRLKAEN PKMVHKEAFS MAAKNWAQFP PAHFRDEIKL KQQQDHEHPR TPWNHFDEPA 240 EDQQEVVSLH WVIGDRLQAK SSVESRDLWI V*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030596

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483897.1	2e-66	axial regulator YABBY 4
Refseq	XP_021895878.1	2e-66	axial regulator YABBY 4
Swissprot	Q9LDT3	8e-61	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A498I9W9	2e-63	A0A498I9W9_MALDO; Uncharacterized protein
STRING	Lus10030596	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-63	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10030596

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]