PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030517
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 317aa    MW: 35134.5 Da    PI: 4.9951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030517genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY733.8e-23131193259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT..EEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk..vveitYegeHnhe 59 
                  +D+++WrKYGqKe+ +++fprsYYrCt++    C+++++v+r ++++k  +  itY g+H+++
  Lus10030517 131 QDEHSWRKYGQKEILNAKFPRSYYRCTHKydqACKATRQVQRLEQETKetMYSITYMGHHTCQ 193
                  8***************************99999*********99876433889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-22124193IPR003657WRKY domain
PROSITE profilePS5081116.375125193IPR003657WRKY domain
SuperFamilySSF1182907.32E-21126193IPR003657WRKY domain
SMARTSM007748.9E-31130194IPR003657WRKY domain
PfamPF031069.3E-23131193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGMQGNNKLQ QEMAMKELAQ GHGFASQLQL LFENSKDHPA AANELVNKIL ESFTSGISAL  60
STAAASTVAI SDQAGERQSS VSGMYEDSGE SCRKRPSPAA AAGKSGGRDN RGSYKRRKSG  120
HSDAITSSSM QDEHSWRKYG QKEILNAKFP RSYYRCTHKY DQACKATRQV QRLEQETKET  180
MYSITYMGHH TCQNAISTSR QSVKPPSTAM NVKEEILTTV NVDDVSNNVN NEENPSEVTT  240
EINDNVDMWM EGLGSFDQAE EAISNYDYHH YSNYGFCGDQ SGQVLDFDFG VKDIDFETEF  300
RFDYQESACG IFPLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19123193169OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030517
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100305170.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-40WRKY DNA-binding protein 70