PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030478

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 430aa MW: 48033.7 Da PI: 8.2284

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030478	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.1e-53	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk+++++ekewyfF++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Lus10030478 18 MLPGFRFHPTDEELVGFYLKRKIHQRPLSI-ELIKHVDIYKYDPWDLPKMTATGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGN 114 579*************************.89***********8888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykgra kg ktdW+mhe+rl Lus10030478 115 KCIGLKKSLVFYKGRATKGMKTDWMMHEFRL 145 67*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-60	9	181	IPR003441	NAC domain
PROSITE profile	PS51005	57.514	18	181	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	20	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MEGESSCSTN LNMDQEVMLP GFRFHPTDEE LVGFYLKRKI HQRPLSIELI KHVDIYKYDP 60 WDLPKMTATG EKEWYFFCPR DRKYRNSARP NRVTGAGFWK ATGTDRPIYS SEGNKCIGLK 120 KSLVFYKGRA TKGMKTDWMM HEFRLPSLSD NHRPPAATSN RAADRTIPAN DAWAICRIFK 180 KTSSTVQRAI SQSWVLPNST ISPHDQVLSR ASGNFFHPSH LSPNKISTTT SLAPPIHQPC 240 HFNYNNNNND TYLDQTHQSN NNFCSFNKPN KPDSFQNLHN NYPLNIETNH SFPSSSLSPF 300 YHLNMPSSSP PSMLLGDFEQ LQGRDHESIG STGPYQLSGA SQRSNGGGGL MSTPIQVGGM 360 HDDQTVANTM VKSADLAHVD ALSLDGLGDI TSPTTWKQNL LLWDYLNSAA SPCPSDHVTS 420 AFSMTKCYS*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MEGESSCSTN LNMDQEVMLP GFRFHPTDEE LVGFYLKRKI HQRPLSIELI KHVDIYKYDP  60
WDLPKMTATG EKEWYFFCPR DRKYRNSARP NRVTGAGFWK ATGTDRPIYS SEGNKCIGLK  120
KSLVFYKGRA TKGMKTDWMM HEFRLPSLSD NHRPPAATSN RAADRTIPAN DAWAICRIFK  180
KTSSTVQRAI SQSWVLPNST ISPHDQVLSR ASGNFFHPSH LSPNKISTTT SLAPPIHQPC  240
HFNYNNNNND TYLDQTHQSN NNFCSFNKPN KPDSFQNLHN NYPLNIETNH SFPSSSLSPF  300
YHLNMPSSSP PSMLLGDFEQ LQGRDHESIG STGPYQLSGA SQRSNGGGGL MSTPIQVGGM  360
HDDQTVANTM VKSADLAHVD ALSLDGLGDI TSPTTWKQNL LLWDYLNSAA SPCPSDHVTS  420
AFSMTKCYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	13	185	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	13	185	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	13	185	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	13	185	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	13	185	15	172	NAC domain-containing protein 19
3swm_B	3e-53	13	185	15	172	NAC domain-containing protein 19
3swm_C	3e-53	13	185	15	172	NAC domain-containing protein 19
3swm_D	3e-53	13	185	15	172	NAC domain-containing protein 19
3swp_A	3e-53	13	185	15	172	NAC domain-containing protein 19
3swp_B	3e-53	13	185	15	172	NAC domain-containing protein 19
3swp_C	3e-53	13	185	15	172	NAC domain-containing protein 19
3swp_D	3e-53	13	185	15	172	NAC domain-containing protein 19
4dul_A	2e-53	13	185	12	169	NAC domain-containing protein 19
4dul_B	2e-53	13	185	12	169	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030478

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023920077.1	1e-120	protein FEZ-like
Swissprot	Q9FIW5	4e-97	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	A0A2R6RFD0	1e-117	A0A2R6RFD0_ACTCH; Protein FEZ like
STRING	Lus10030478	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-99	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	Lus10030478