PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 363aa MW: 41397.9 Da PI: 8.0003 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.9e-19 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t+ kR++gilKKA+ELS+LCd+ + +++fs+tgk Lus10030450 10 KLENTNGRQATYWKRKHGILKKANELSILCDIPIILLMFSPTGK 53 6799**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.722 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.81E-23 | 2 | 54 | No hit | No description |
PRINTS | PR00404 | 4.1E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-16 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGRVKLKIKK LENTNGRQAT YWKRKHGILK KANELSILCD IPIILLMFSP TGKPSLCKGK 60 RSIEEVVTKF AQLTPQERTK RKLESLEALK KTFKKLDHDV NISEFFGSSS QTIEDLTNQA 120 NLLENQLSET RKRLSYWTNA DEIHSVDHLE QLENSVRESL SRIQAHKEYL GKQQIVSLDC 180 NSQPCLQFQN EMQMPFRINP EQQQVPPLQQ WLTNCDNQHF MLPDDLNLLP RRDIECSASS 240 SYGSYSRYYP TGKASDLSNS RQESAVSGIL NELNGNTSLR MQLPGQQYPQ YIPYNLNLLN 300 EVKFQPAPER SLQEIPADFH LNGSFEVPKP SYCTTPGSWA TTSGPCSVIM FDNQLFSQVH 360 PQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030450 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020533759.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_020533760.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X2 | ||||
Refseq | XP_020533761.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X2 | ||||
Swissprot | Q1PFA4 | 4e-99 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A067KYG7 | 0.0 | A0A067KYG7_JATCU; Uncharacterized protein | ||||
STRING | Lus10030450 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 6e-87 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Lus10030450 |
Publications ? help Back to Top | |||
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