PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030424
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 457aa    MW: 49284.6 Da    PI: 8.7629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030424genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.6e-34212268259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgsefprsYY+Ct ++Cpvkkkvers  d++v+ei+Y+g+H h+
  Lus10030424 212 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPKCPVKKKVERSL-DGQVTEIIYKGQHSHP 268
                  8****************************************.***************8 PP
2WRKY101.16.6e-32359417159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d ++v++tYeg+H h+
  Lus10030424 359 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAASDSRAVITTYEGKHYHD 417
                  59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-30200270IPR003657WRKY domain
SuperFamilySSF1182905.75E-26209270IPR003657WRKY domain
SMARTSM007742.0E-37211269IPR003657WRKY domain
PfamPF031068.2E-26212268IPR003657WRKY domain
PROSITE profilePS5081123.456212270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-36344419IPR003657WRKY domain
SuperFamilySSF1182907.19E-29351419IPR003657WRKY domain
PROSITE profilePS5081137.723354419IPR003657WRKY domain
SMARTSM007745.4E-37359418IPR003657WRKY domain
PfamPF031061.8E-24360416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAENEGRRPP PPSSRPSNIT LPPRSFGEMF AAAGGGGGGG TPNGFGLSPG PMTLVSRFFS  60
ADGGGGGEDF KNFSQLLAGV MSPVAATTRA AEAGSTKVEE EKEGFSKVSS SAVAPTQPAS  120
AMFMVPAGMS PAALLDSPGM GLFSPQAPYG ASNQQAFAQF TSQMTSSTSE SMVQQQQIVP  180
VSESAKIEPL TGSSYPDQRS NVSLFVIDKP ADDGYNWRKY GQKQVKGSEF PRSYYKCTNP  240
KCPVKKKVER SLDGQVTEII YKGQHSHPPP QSSKRTGQVN VESGSQSSNL KRKEQESSSQ  300
ATGDHLSVTS DSDENDEDEP DAKRRNVEVK VTEATSSSSH RTVTEPRIIV QTTSEVDLLD  360
DGYRWRKYGQ KVVKGNPYPR SYYKCTTQGC NVRKHVERAA SDSRAVITTY EGKHYHDVPA  420
AKHSSHNIAS SLNRIASTNQ HQQSIVQLRL KDEQMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-40191420378Probable WRKY transcription factor 4
2lex_A4e-40191420378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030424
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012596.11e-159PREDICTED: probable WRKY transcription factor 4
RefseqXP_021685222.11e-159probable WRKY transcription factor 3
SwissprotQ9XI901e-143WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2C9WIN71e-156A0A2C9WIN7_MANES; Uncharacterized protein
STRINGLus100304240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-126WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]