PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030240
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 479aa    MW: 52830.6 Da    PI: 8.5705
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030240genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-20125226199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+lt sd++++g l++p+k+a+e       + + + s++l+ +d +g +W++k+i+r+ + r+++++GW++Fv+ ++L + D +vF   + ++ +l
  Lus10030240 125 FSKILTVSDTSTHGGLSVPRKYATESlppldlS-QATPSQELVTKDFHGHEWRFKHIFRGEPPRHLISTGWSKFVNGKKLAASDEFVFV--RGEDDRL 219
                  889********************999****952.4455679************************************************..3488889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+v+r+
  Lus10030240 220 LVGVRRS 226
                  *****97 PP
2Auxin_resp51.35e-18251327183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse.rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha++  s+F+v+Y+P+a  s F++ v+k +ka+ + + vGm ++     ++  e   ++Gt+v v d+++ +Wp+S+WrsLk
  Lus10030240 251 ARHAINGLSIFSVYYKPSA--SSFIIGVNKCLKAMGHAFHVGMHVQT----NEYGEyLGYTGTIVEVGDFSS-QWPGSQWRSLK 327
                  57899999*********97..99*******************98764....444440457*********888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-34116237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-27120230IPR015300DNA-binding pseudobarrel domain
CDDcd100177.72E-19123225No hitNo description
SMARTSM010192.6E-16125227IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169125227IPR003340B3 DNA binding domain
PfamPF023622.0E-18125226IPR003340B3 DNA binding domain
PfamPF065073.0E-16251327IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MASASVPAAS SPSRGKKNDA LLDELWNACA RTTHGVPKEE EMVYYFPQGH MEQLQGTMNM  60
QPDQRIPLYE LPCKILCQVV NVSRMIEEDT DEVYAQITLQ AIKQTEITNP VPNPPEKPRP  120
RVHSFSKILT VSDTSTHGGL SVPRKYATES LPPLDLSQAT PSQELVTKDF HGHEWRFKHI  180
FRGEPPRHLI STGWSKFVNG KKLAASDEFV FVRGEDDRLL VGVRRSSRKK LPVASPVLSP  240
QSLNLAVVAT ARHAINGLSI FSVYYKPSAS SFIIGVNKCL KAMGHAFHVG MHVQTNEYGE  300
YLGYTGTIVE VGDFSSQWPG SQWRSLKVQW DEPSGVERLP ERVSPWEVEP LGDPPYHSVP  360
LLAGNKRMRS PQGSDAVSSS DAARVHNESN LGGNIRKSSL PHLNAPLKLF PDLAESSKAV  420
LWRSLYSGPV PPDNSSGRSN GQKDKQKVNE NPSNFRLFGF DITGNDTNAS NAPTTHSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-11983512355Auxin response factor 1
4ldy_B1e-11983512355Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021635914.11e-142auxin response factor 18-like
TrEMBLF6I6F31e-139F6I6F3_VITVI; Auxin response factor
STRINGLus100302400.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.11e-126auxin response factor 18