PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030175
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 618aa    MW: 68858.1 Da    PI: 4.5824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030175genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.69.4e-4061393128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  +G+rFhPtdeel+ +yLk k++g+   +++vi+evd+y++eP+dLp+    + +++++ wyf+++ d k +++kr+nrat+sg+Wk tgk + ++++ 
  Lus10030175   6 VGYRFHPTDEELIAHYLKLKMNGHGSLVDKVIPEVDVYRLEPSDLPNytvvESSSDDQVWYFYCRLDYKFKNSKRANRATESGFWKVTGKPRFIVARd 103
                  7************************999999***************5465545557889***********************************9998 PP

          NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                  +ge++g kktLvf+   +g + k+++tdWv+h+y++
  Lus10030175 104 SGEQIGEKKTLVFFyraRGGDAKPVSTDWVIHQYQA 139
                  8999********9988878899999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.9654157IPR003441NAC domain
SuperFamilySSF1019417.98E-445157IPR003441NAC domain
PfamPF023653.5E-216138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MAAASVGYRF HPTDEELIAH YLKLKMNGHG SLVDKVIPEV DVYRLEPSDL PNYTVVESSS  60
DDQVWYFYCR LDYKFKNSKR ANRATESGFW KVTGKPRFIV ARDSGEQIGE KKTLVFFYRA  120
RGGDAKPVST DWVIHQYQAT TLLPDQTEYV ICKLKNKGDC WTKNSAARTS GEPSHSTSTA  180
SDAGNHGASI QVGDSDTVVV GNSPSTIQPR LFIKEGLSLD DFLQGDDDLF FNQPDNGPST  240
LLRFNFDEEE EVDPDSYLLI PDDYLSNETA YAHPNDYRPE KALSTYHVEG DVKEFNVITS  300
EVPEMYQLFA GIPQSKSTPR NNQHQLQSLM VSKDKGDSDT VVVGNSPSTI QPRLFIKEGL  360
SLDDFLQGDD DLFFNQPDNG PSTLLRFNFD EEEEVDPDSY LLIPDDYLSN ETAYAHPNDY  420
RPEKALSTYH VEGDVKEVNV ITSEVPEMYQ LFAGIPQSKS TPRNNQHQLQ SLMVSKDKFA  480
INGSILQAEE GTRESLTGGK KDLPLGGAGG MEIPLIGAER PIACQGAMKE IQLVRAGGME  540
IPRIGAQRPV RVMNLQSVMK LESTAHEPGK GWKVGSLIEM VEVPESRMQS PPTVYMTNIL  600
VALLALAFFI YELPFLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-26716318174Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030175
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100301750.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-39NAC transcription factor-like 9