PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29177 Da PI: 4.9224 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.7 | 3.1e-42 | 8 | 136 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +G rFhP++e+lv++yLk k+ g ++e+ ++i+ev+++k+ePw+Lp + +++++e wyf s+ d kya++kr+nr+tk+gyWk tgk++ v ++ Lus10030174 8 VGWRFHPSEEQLVNHYLKLKMLGYDHEV-RHIAEVNVNKFEPWQLPgQassEADSDEPVWYFLSCPDYKYANSKRSNRTTKKGYWKPTGKERIVRAEs 104 79***********************999.88***************5444333445559*********************************999987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 ++e++g+kktLvf+kgr p g+ktdW+mhey+ Lus10030174 105 TNEEIGTKKTLVFHKGRVPGGVKTDWIMHEYK 136 7888***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.966 | 6 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-45 | 7 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-22 | 8 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSSNVSRVGW RFHPSEEQLV NHYLKLKMLG YDHEVRHIAE VNVNKFEPWQ LPGQASSEAD 60 SDEPVWYFLS CPDYKYANSK RSNRTTKKGY WKPTGKERIV RAESTNEEIG TKKTLVFHKG 120 RVPGGVKTDW IMHEYKPLFS FPNQRDFLLY KLMDKSSSTT NDDDEEQPNV EGGESSTGMS 180 SNFPNPNPSS YENAPFPIEP REDSQLQADL DGFSGYDEMS YNLNSVMQQQ QQQQPWTWNT 240 DENLSYDHSF YG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 9 | 159 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 9 | 159 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 9 | 159 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 9 | 159 | 20 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-34 | 9 | 159 | 23 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-34 | 9 | 159 | 20 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 9 | 159 | 20 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030174 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301328.1 | 3e-71 | protein NTM1-like 9 | ||||
Refseq | XP_024450979.1 | 3e-71 | protein NTM1-like 9 | ||||
TrEMBL | B9GPV5 | 7e-70 | B9GPV5_POPTR; Uncharacterized protein | ||||
STRING | Lus10030174 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 4e-43 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Lus10030174 |