PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030143
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 350aa    MW: 39856.8 Da    PI: 7.7232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030143genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-532053341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++  
  Lus10030143 205 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLG 301
                  69****************************.9***************952444443456*************************************** PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Lus10030143 302 NSQRIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 334
                  *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001717.2E-4430172IPR015590Aldehyde dehydrogenase domain
Gene3DG3DSA:3.40.309.101.2E-4530172IPR016163Aldehyde dehydrogenase, C-terminal
SuperFamilySSF537201.57E-4031184IPR016161Aldehyde/histidinol dehydrogenase
SuperFamilySSF1019412.35E-55195339IPR003441NAC domain
PROSITE profilePS5100552.761205349IPR003441NAC domain
PfamPF023656.1E-28206334IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDEVLIQHDE LKCDRIALWT LIADTWLDTK EGIYDEFVGK LAVKAKDWVV GDPFHPASRL  60
GPQVDKKQYE KILHIEQGKK EGDTLLTSGK AAANKGYYIH PTVFTDVTDM TIVKDEIFGP  120
VMSLMKFKTT EEAIKLANNT RYGLAVGIVT NNLDIANTIS RLIRAGVIWI NFTLCSIMIA  180
LTEGTNLLQL YILIRFMAGS GQLTVPPGFR FHPTDEELLY YYLRKKVSYE AIDLDVIREV  240
DLNKLEPWDL KEKCRIGTGP QNEWYFFSHK DKKYPTGTRT NRATTAGFWK ATGRDKAIHL  300
GNSQRIGMRK TLVFYTGRAP HGHKTDWIMH EYRLDDDNSD VQVLLNHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4pxl_A1e-5922171319470Cytosolic aldehyde dehydrogenase RF2C
4pxl_B1e-5922171319470Cytosolic aldehyde dehydrogenase RF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100301430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-83NAC family protein