PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030063
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 621aa    MW: 70352.9 Da    PI: 6.8373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030063genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07209229425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  ++C f+++ G+C+ Gd+C+F H
  Lus10030063 209 VPCYFYLQ-GFCSKGDTCTFLH 229
                  69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508089.74955125IPR003656Zinc finger, BED-type
SMARTSM006147.0E-1155105IPR003656Zinc finger, BED-type
PfamPF028924.4E-75898IPR003656Zinc finger, BED-type
SuperFamilySSF576674.4E-658108No hitNo description
PROSITE profilePS5010310.371157183IPR000571Zinc finger, CCCH-type
SMARTSM003560.6159182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6205230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525205232IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5205231IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5209230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4210231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MSSQGVHGDD QHNSSTASTA AVGNGAVVHA TDVHLQNPDA VAGNRAVEEV INVGGLKSPV  60
WSHYSKIRIN GVVKAKCNYC RKFLVGDSNS GTTHLKNHTR ICVPKKIRDG SQKILGTHYS  120
AKRKQDLMVG GNAFNLDFSK REFAGAECEY RHSDMARLNP RDCWYWLSGS CLNPTCAFRH  180
PPLENPTEVP SESGLGPSQA NQSTNKNAVP CYFYLQGFCS KGDTCTFLHA PHGSTSTAKS  240
VKMPSTNSDG HPVNSSQASG SKTALAPTKV QNNLHETAQK PSMDMKLQSK EEMQQLAPDV  300
EVQKSSPLQI AVTNDEEARV YETDTLLPPE SYKEDISYMR SDLNSEDYAD DHIEQEPWES  360
SPGFDVLVDN EEEENLCYED EQDYVVSLDR EQRVVDNQFV EYNFEEPDEY VRLGFSQRRE  420
LDLRDHLRKR RAVDGEQFSS RSVRRRESSL LYEPYHLSRG SHDRRYEHGL NEQNRRSHER  480
PYKHGLSRRI RENHIRQYEH GLSERLRGRL VCDIGRTGIE FVNGYGIRGN CASERGWMKH  540
LQFHRPMIHG ECYVPYDFGW RPVGRERRSS EKGRGEFSRQ NGYSIERDGD MTGTESAATN  600
FEGPKPLNEI LKEKKKLVEV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417429RRELDLRDHLRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100300630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823