PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 615aa MW: 64706.1 Da PI: 7.269 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.7 | 1.5e-20 | 377 | 417 | 2 | 41 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v r Lus10030040 377 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVRRG 417 7***************************99********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-22 | 361 | 417 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-18 | 369 | 418 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.794 | 371 | 416 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-19 | 376 | 432 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-18 | 378 | 418 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MARTSTRSGL SIDSPDLLTA PTTTTTSTTL PSHTRSSPAA TTTTPSSCRF LFSVGQAPTV 60 LNSLPLMDSS SSPAPEIIAQ PTTIQFVDDG GGADAGGGGG VCHLVHHRRK VIDEMDFFAQ 120 RNNNSDSVDL MSVDSDRRDG LELKVNTGLN LLTRNTSSEQ SVVDDGGGTS STNADDRRLK 180 TEVLNLQAEL DRMKVENLRL KDMLNQVNSS YAALQMHVMS LHHDQKPVPA PTAADVDDKK 240 ANGGGAMVPR QFMDLGLASS AIGAAGGTTG DTDDLSLSSS EGRSRDRSRS PTAANNNNDE 300 ASAAAAADVD SKKAIVEREE SPDQGGGGGG GGGWAGGASN KVARFNGSPN KSVDQTEATI 360 RKARVSVRAR SEAPMITDGC QWRKYGQKMA KGNPCPRAYY RCTMATGCPV RKQVRRGPYS 420 TDNNLRRDTH PPTPTGGDGN GVDDLVCGEN ASLRLNVQHR RTHELQFPHQ NPPPMLFKHG 480 HDLSFSSFPN CYIGPDPNAE PINRPPTTTA KPPTPAPLPH NRXXXXXXPV RGVAAAALLP 540 QLFGQALHNQ SKFSGLQMSQ DIDHNAAAAS LFSHAIQGGG SGGGGGGQNQ LADTAGAIAA 600 EPNFNAVLWG RSAQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021673088.1 | 1e-110 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A140H8M0 | 1e-103 | A0A140H8M0_MANES; WRKY transcription factor 16 | ||||
TrEMBL | A0A2C9UPJ1 | 1e-103 | A0A2C9UPJ1_MANES; Uncharacterized protein | ||||
STRING | Lus10030040 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 7e-38 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030040 |