PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029988
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 505aa    MW: 54856.1 Da    PI: 7.6575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029988genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-105884127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C +++r+G C yG +C+++H++
  Lus10029988 58 PGEPDCVYYLRNGVCGYGVNCRYNHPQ 84
                 5789*********************97 PP
2zf-CCCH375.7e-12105129327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C ++++tGtCkyG++Ck++H++
  Lus10029988 105 EPDCGYYLKTGTCKYGSTCKYHHPK 129
                  789********************96 PP
3zf-CCCH37.24.8e-12179202427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++++rtG Ck+G+ CkF+H++
  Lus10029988 179 KSCPYYMRTGVCKFGGACKFHHPQ 202
                  56********************97 PP
4zf-CCCH38.22.4e-12329354227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+ tGtCkyG+ Ck++H++
  Lus10029988 329 DQPECRHFMNTGTCKYGSDCKYHHPK 354
                  689*********************96 PP
5zf-CCCH31.53.1e-10375401127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC+++  +G+Ck+G++C++ H++
  Lus10029988 375 PGQALCSNYITYGICKFGSNCRYDHPF 401
                  5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7465785IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55784IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-75984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-56284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098102130IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5102129IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6107130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4108128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6175203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192175203IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-5177202IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10178202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4180201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.633327355IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5327354IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6330355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6333354IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4374401IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342374402IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6376401IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5377402IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MPDTSTNNSQ QTKNNNAGPN QSSDNIEEAI RRLKIHDDQE KGGGGGDVND SGPYPDRPGE  60
PDCVYYLRNG VCGYGVNCRY NHPQYAAQVT KGTQLKEELP ERIGEPDCGY YLKTGTCKYG  120
STCKYHHPKD RNGAGPVSYN LLGLPMRQVH LTKANKPYES SEIRSEELTV VVLFNQDEKS  180
CPYYMRTGVC KFGGACKFHH PQPASLEAGV PLAGLSTYGS TGSSLIPTAG LPYVGGLPTW  240
SMPRVPYMPA PRLETPQAFA PLYISPSQGI PPPAQGWNTY VGNLSPMSSP SILGSNLVFN  300
SRNHDSAPPN GQIHLMSSPL TSNLPQRPDQ PECRHFMNTG TCKYGSDCKY HHPKERTVHQ  360
LATNPAAPLG LPSRPGQALC SNYITYGICK FGSNCRYDHP FTGYPYSYSL TVPPLSVLDP  420
SMVTYPPRMS EPPLTAPQTK VYYNNNGARN TKHQYQMNAG TNTEKTIVAT TTTTPPSDEA  480
TDTTADPSPP PHSSSKASSE ASHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9SSJ90.0B9SSJ9_RICCO; Zinc finger protein, putative
STRINGLus100299880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-105C3H family protein