PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10029904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 459aa MW: 50175.2 Da PI: 9.313 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lus10029904 102 FVCEICSKGFQRDQNLQLHRRGH 124 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00055 | 179 | 201 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Lus10029904 179 WKCEKCSKKYAVQSDWKAHSKSC 201 58*****************9987 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.001 | 209 | 227 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Lus10029904 209 DCGTVFSRRDSFITHRAFC 227 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 101 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-7 | 101 | 124 | No hit | No description |
PROSITE profile | PS50157 | 10.887 | 102 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 43 | 144 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 167 | 199 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-7 | 174 | 199 | No hit | No description |
SMART | SM00355 | 140 | 179 | 199 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MSNIKGGIFG GDEDDQQQLI LASQQQQEVA THHHLHHHHH LISSIANSTT TTSNSNGSIT 60 TITTTQPAPH LIKKKRNLPG NPDPKAEVIA LSPKTLMAKN RFVCEICSKG FQRDQNLQLH 120 RRGHNLPWKL KQRNKDEVIR KKVYVCPEPD CVHNNPARAL GDLTGIKKHF SRKHGEKRWK 180 CEKCSKKYAV QSDWKAHSKS CGTKEYKCDC GTVFSRRDSF ITHRAFCDAL AEETKASAGI 240 IVNHSTPQSV SNYQITLNTN NKPNPDHQLF NPTPPETTSS KLNHFISLPP PPTTTSTTLS 300 SSLHLSTTPF FASSSASMSA TALLQKAAQM GSTLGSCRPT TPFPSTTTSS PSTNGMQLFM 360 RGGDPYSIDS SQLLFSNQFF HDGLINGNFP GSPGFVNAGG NNNNANSAAA ALWKSFDDGM 420 TTVDFLGVNN GETTSSASRV TRNMDMVLTR FDDEPPLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 175 | 233 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 175 | 233 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 141 | KQRNKDEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10029904 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036840.1 | 1e-121 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q8H1F5 | 1e-111 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | B9H586 | 1e-119 | B9H586_POPTR; C2H2 family protein | ||||
STRING | Lus10029904 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-105 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10029904 |
Publications ? help Back to Top | |||
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