PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029719
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27415.2 Da    PI: 9.3415
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029719genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.28e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien snrqvt+skRrng++KKA+E+ vLCda v++iif+s+gk+++++s
  Lus10029719  9 KRIENVSNRQVTYSKRRNGLIKKAKEITVLCDAHVSLIIFASSGKMHDFCS 59
                 79***********************************************96 PP
2K-box71.92e-2471167197
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  y+k+sgk+l++ak+e+l++e++++kke++n+q e+Rhl Ged++sL++keL+ Le++L++++++i + ++e+   + ++ ++ e+e+++ n  L ++
  Lus10029719  71 YHKQSGKRLWDAKHENLSNEIDRMKKENDNMQIELRHLRGEDITSLNYKELMVLEEALQNGISRITELQSEYRDLMKKKGKMAEDENKRLNFILMQQ 167
                  8999*************************************************************99998887777777777777777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
CDDcd002653.64E-41280No hitNo description
SuperFamilySSF554551.7E-34296IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1482161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.62384171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIEIKR IENVSNRQVT YSKRRNGLIK KAKEITVLCD AHVSLIIFAS SGKMHDFCSP  60
STTLPDILEK YHKQSGKRLW DAKHENLSNE IDRMKKENDN MQIELRHLRG EDITSLNYKE  120
LMVLEEALQN GISRITELQS EYRDLMKKKG KMAEDENKRL NFILMQQQQQ EEEMKRLQGM  180
TLMEGYHHHS HHNHQHRSSA TAAAAAMNMR DNNNNNNNSD HQMPFSLIPM QPNLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-17175173MEF2 CHIMERA
6byy_B7e-17175173MEF2 CHIMERA
6byy_C7e-17175173MEF2 CHIMERA
6byy_D7e-17175173MEF2 CHIMERA
6bz1_A6e-17191183MEF2 CHIMERA
6bz1_B6e-17191183MEF2 CHIMERA
6bz1_C6e-17191183MEF2 CHIMERA
6bz1_D6e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292651.13e-95floral homeotic protein PMADS 2
RefseqXP_022154226.13e-95floral homeotic protein PMADS 2
SwissprotQ074743e-90MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A0P0IP593e-94A0A0P0IP59_MERAN; Pistillata
STRINGLus100297191e-175(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]