PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029602
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 171aa    MW: 18991.6 Da    PI: 11.805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029602genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.5e-164393155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr +    +Wv+e+r+p     +  +r++lg++ tae+Aa+a++ a+++++g
  Lus10029602 43 PVYRGVRKRN-GDKWVCELREP-----HskTRVWLGTYPTAEMAARAHDVAALSFRG 93
                 68*****887.8*********6.....336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-114393IPR001471AP2/ERF domain
SMARTSM003803.3E-2644107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3044103IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2044103IPR016177DNA-binding domain
PROSITE profilePS5103221.85244101IPR001471AP2/ERF domain
PRINTSPR003673.0E-84556IPR001471AP2/ERF domain
CDDcd000188.05E-2645103No hitNo description
PRINTSPR003673.0E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDMNFNTHHS VTDSSSSDGG HKLAAENPKK KAGRRVFKET RHPVYRGVRK RNGDKWVCEL  60
REPHSKTRVW LGTYPTAEMA ARAHDVAALS FRGKSACLNF ADSAWRLPLP TSTDNKDVRV  120
AASRAAEMFR PVNCGSTGSG SSFATPRPRC WLTAPRRRRG RRRRTVGGVK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029602
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087007.13e-60dehydration-responsive element-binding protein 1A
SwissprotQ9LN868e-57DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A089NAH73e-60A0A089NAH7_POPDE; CBF3 (Fragment)
TrEMBLA0A089NCA53e-60A0A089NCA5_POPBA; CBF3 (Fragment)
TrEMBLA0A089PL713e-60A0A089PL71_POPBA; CBF3 (Fragment)
STRINGLus100296021e-122(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.13e-59ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]