PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029592
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 676aa    MW: 74920.1 Da    PI: 6.2462
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029592genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.94.6e-1252916601373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+l+++c+ea++s++ +++++++++l elasp+g+p+ Rl ay+teALa r++r ++++++  +p++ + + ++++ +al++ ++vsPi+kf h+ta
  Lus10029592 291 LVSLITSCVEAIRSRNVAMVNHFISKLGELASPKGSPISRLSAYYTEALALRVTRIWPQVFHLATPRDVD-RVEDDTGTALRIMNQVSPIPKFIHFTA 387
                  57899********************************************************999888886.67899999******************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+++l+a+eg+++vHiiDfdi+qGlQWp+++q+LasR ++p ++RiTgvg+    sk+ l+etg+rL+ fAe+l++pfef++ v++rled++l++L+v
  Lus10029592 388 NEMLLRAFEGKDKVHIIDFDIKQGLQWPSFFQSLASRCNPPSHVRITGVGE----SKQDLNETGDRLSGFAEALNLPFEFHP-VVDRLEDVRLWMLHV 480
                  ***************************************************....9**************************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgre 293
                  k+gE++aVn+ +q+h++l ++  ++   ++++ l+ks++P  v+++eqea+hn++s+  r++++l+yysa+fds+ +  lp es  rik+E++ ++re
  Lus10029592 481 KEGESVAVNCLFQMHKILYDTNGVAL--RDFIGLIKSTNPVTVIMAEQEAEHNGSSLESRVCNSLRYYSAVFDSIdSGLLPLESPVRIKMEEM-FARE 575
                  ******************99888877..99*********************************************666789999*********.**** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee....sgslvlgWkdrpLvsvSaW 373
                  i+nvv+ceg +r+erhe++ekW++ +e+ GF++v ++e++  q ++ll++++ +  y v ++      +l+l+W ++pL++vSaW
  Lus10029592 576 IRNVVSCEGIDRVERHEKFEKWKSLMEQGGFHSVGITEREFLQGQMLLKMYScGGNYGVMKQgggeALALTLTWLGEPLYTVSAW 660
                  ****************************************************6666999987544344677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.573265636IPR005202Transcription factor GRAS
PfamPF035141.6E-122291660IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MLAGCSSSST LLSPRHRLRS ESAAGGAGGA QFPACQFQLP SMSTQRLDLP SCTFPRKDQS  60
SRSQSIRPVG VSVDNRPLDS KTSRCSSLKQ NIRLPPLATA TVKDDFWDQG RNQQKQKKRF  120
AEQDDDDESY INRTKRKKCS NDHGKSANYG HEGGLGQFGS GKFWFQPNFQ VPFSLTCSGE  180
DERVCYVPSE VISPPRPLSN NPWVDSVITQ ITDLGGKDGE GSQRRPGKEA SGSSSTSSDS  240
DSLELRLSER NPEEHEVGNG SRNPHHPQHN AATMEAAEEE DQDGEVRGLE LVSLITSCVE  300
AIRSRNVAMV NHFISKLGEL ASPKGSPISR LSAYYTEALA LRVTRIWPQV FHLATPRDVD  360
RVEDDTGTAL RIMNQVSPIP KFIHFTANEM LLRAFEGKDK VHIIDFDIKQ GLQWPSFFQS  420
LASRCNPPSH VRITGVGESK QDLNETGDRL SGFAEALNLP FEFHPVVDRL EDVRLWMLHV  480
KEGESVAVNC LFQMHKILYD TNGVALRDFI GLIKSTNPVT VIMAEQEAEH NGSSLESRVC  540
NSLRYYSAVF DSIDSGLLPL ESPVRIKMEE MFAREIRNVV SCEGIDRVER HEKFEKWKSL  600
MEQGGFHSVG ITEREFLQGQ MLLKMYSCGG NYGVMKQGGG EALALTLTWL GEPLYTVSAW  660
IPVDIAGSSS SFSQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-662756624379Protein SCARECROW
5b3h_D5e-662756624379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116137KKRFAEQDDDDESYINRTKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477403.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2H5Q8T60.0A0A2H5Q8T6_CITUN; Uncharacterized protein
STRINGLus100295920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein