PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029525
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 296aa    MW: 32937.9 Da    PI: 8.9079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029525genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06140159120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C+ksF+r  nL+ H+
  Lus10029525 140 FSCHLCSKSFNRYNNLQMHM 159
                  89*****************9 PP
2zf-C2H215.93.6e-05224246123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  k + ++H +++
  Lus10029525 224 FMCRKCGKPFAVKGDWRTHEKNC 246
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.32E-6132162No hitNo description
Gene3DG3DSA:3.30.160.602.4E-4140159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.762140167IPR007087Zinc finger, C2H2
SMARTSM003550.42140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SuperFamilySSF576675.12E-6210244No hitNo description
Gene3DG3DSA:3.30.160.605.5E-5211244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572224244IPR015880Zinc finger, C2H2-like
SMARTSM00355160250273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MADPSASETS AAVGWFNFFP LTTNTTKGAS LSSSIDLNGP PPSTPLLIDY FSHGKQKEPR  60
YHHPNSNSTI SLHIGPPPPP SWVSSSTSSS SSSSSSANKT CSGSNNINRE DAHFSSLLVN  120
KSEQYWIPTP TQILFGPSQF SCHLCSKSFN RYNNLQMHMW GHGSQYRKGP DSLKGSQPTA  180
MLRLPCYCCA AGCKHNIDHP RAKALKDFRT LQTHYKRKHG IKPFMCRKCG KPFAVKGDWR  240
THEKNCGRIW YCICGSDFKH KRSLKDHVKS FGHSSRDREE DEDEDELDGD PTVNI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231115.11e-111zinc finger protein WIP2-like
RefseqXP_009763748.11e-111PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_016447718.11e-111PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-98ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3Y6301e-110A0A1S3Y630_TOBAC; zinc finger protein WIP2-like
TrEMBLA0A1U7VBK91e-110A0A1U7VBK9_NICSY; protein TRANSPARENT TESTA 1-like
TrEMBLA0A3Q7EIT51e-110A0A3Q7EIT5_SOLLC; Uncharacterized protein
STRINGLus100295250.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-99C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]