PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10029405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 669aa MW: 72658.2 Da PI: 7.1993 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 350 | 387 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Lus10029405 350 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 387 664459******************************88 PP | |||||||
2 | BELL | 119.5 | 1.5e-38 | 213 | 284 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkak +s+l+eV++rY+qy++q+q+vi++Fe++ag+g+ak Yt+lAlk+iS++FrcL+dai++qi Lus10029405 213 ERQEIQMKKAKVISMLDEVEQRYRQYHHQMQAVIGAFEQAAGIGAAKTYTALALKTISKQFRCLRDAITGQI 284 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-60 | 127 | 282 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-48 | 134 | 281 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 328 | 391 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-9 | 331 | 395 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-12 | 331 | 392 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-17 | 332 | 398 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 334 | 397 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 348 | 387 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MNPSYVQYSD TPPPPQQPPP PQFVGIPLDH HHQQHHHELS SPPAIHHRQL HHYNLYSSAI 60 DPTEAAARET PRPHQQGLSL TLSAAAAAAG GGYGSGMSED HCVRVSAGSG SSSVTVANNG 120 GGGSGVHNGM QLGVLVSSKY LKAAQELLDE VVNVNGNGNG NGTHGAVSKN GESGSRKAIN 180 DNNNSAVGGE SSVAGDGKVD EGVQPAPELS TVERQEIQMK KAKVISMLDE VEQRYRQYHH 240 QMQAVIGAFE QAAGIGAAKT YTALALKTIS KQFRCLRDAI TGQIKAANKS LGEEESPGGG 300 KIEGSRLKFV DHHLRQQRAL QQLGMIQHNA WRPQRGLPER SVSILRAWLF EHFLHPYPKD 360 SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYTEE MKDQEQTNNN GVSGDKITSN 420 KSDQNEESSS QSVPFRHDKN LGSSSFRSSV DNNNNNNSPN QNVPSGISIS TFPPPIGSLR 480 NHSAFSITAS SELEGITQGS PKKPRNNNHI DMLQLPSPTS VQSNNNNNNN DHHDLIKFVD 540 ERQSRDAGYS FMGVHNNFMH GAFGQYPIAE IGRFDPDQFT QRFSSGNGVN LSLGLPHCDN 600 LNLSAATTHQ SFLPNQSIQL GIRRNDQMGE ANEFGAIASS AAPTTYESIN NIQNRKGFAA 660 PLLPDFVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 337 | 395 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 337 | 395 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 3e-16 | 337 | 394 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 337 | 394 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10029405 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021650408.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021650409.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021650410.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021650411.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021650412.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021650413.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-159 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2N9GIG5 | 0.0 | A0A2N9GIG5_FAGSY; Uncharacterized protein | ||||
STRING | Lus10029405 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-121 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10029405 |
Publications ? help Back to Top | |||
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