PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10029135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 222aa MW: 24923.9 Da PI: 5.0004 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 211.9 | 2.2e-65 | 14 | 201 | 4 | 169 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee.....lleelkveeenlksnvekees 91 s eq+CyvqC+fC+til+vsvP +s+++vvtvrCGhCtsllsvn+ kas l a+ +h d+++ + l+e + e e++ s + +e++ Lus10029135 14 ASLVEQICYVQCGFCTTILLVSVPCSSMSMVVTVRCGHCTSLLSVNMIKASfvpfhLLSASLDHRDHDIVTPpprhqSLNEWQEEVEEVASPEAEEDH 111 56789******************************************999878884556778999998876667777344444444444444444443 PP YABBY 92 astsvs.sekl..........senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ +++ + +l +++ed ++++ + +++PPekrqr+Psayn+fikeei+r+k++nP ++h+eafs+aaknWahfP++h+ Lus10029135 112 EEGDQKgTLSLmnsgtsddnnEDHEDSNTTNLNRiINKPPEKRQRAPSAYNCFIKEEIKRLKSENPTMAHKEAFSMAAKNWAHFPPVHYR 201 3332220222246677764333333333444444589***************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.0E-62 | 17 | 201 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.07E-9 | 143 | 196 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.0E-5 | 149 | 196 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPLSHMFDLS SSAASLVEQI CYVQCGFCTT ILLVSVPCSS MSMVVTVRCG HCTSLLSVNM 60 IKASFVPFHL LSASLDHRDH DIVTPPPRHQ SLNEWQEEVE EVASPEAEED HEEGDQKGTL 120 SLMNSGTSDD NNEDHEDSNT TNLNRIINKP PEKRQRAPSA YNCFIKEEIK RLKSENPTMA 180 HKEAFSMAAK NWAHFPPVHY RVEEDGDGDQ IRLNEPRQIF K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10029135 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633751.1 | 3e-72 | axial regulator YABBY 4 isoform X4 | ||||
Refseq | XP_021633753.1 | 3e-72 | axial regulator YABBY 4 isoform X6 | ||||
Swissprot | Q9LDT3 | 1e-63 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2P5FMG1 | 5e-72 | A0A2P5FMG1_TREOI; YABBY protein | ||||
STRING | Lus10029135 | 1e-166 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 7e-48 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10029135 |
Publications ? help Back to Top | |||
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