PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10029022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 27679.2 Da PI: 8.2971 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.8 | 4.6e-28 | 152 | 212 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ gs+fpr+Y+rCt++ +C++kk+v+r ++dp++ e+tY+g+H+++ Lus10029022 152 EDGFTWRKYGQKEILGSRFPRGYFRCTHQklyNCRAKKQVQRLDHDPDTYEVTYRGRHTCH 212 7****************************999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.3E-27 | 147 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-25 | 148 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 151 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.392 | 152 | 214 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 152 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDQTLALLLH ACNLARHLES NLLPHINNSE ALSKSCDEII AVFLACKERL SLSGNPQQGG 60 LSGQPPWLMK CSSSNPSAMT TMEMFQAADH DQVANTTASM GMTTMEVAPG APSSSSGGVR 120 FGGGGAAGKN EADRKTIRVP VPRVGNTEIP PEDGFTWRKY GQKEILGSRF PRGYFRCTHQ 180 KLYNCRAKKQ VQRLDHDPDT YEVTYRGRHT CHMSTTAPSV GPAPEEPHTG PSVTSALQQV 240 ITAAAQQQQS KASWAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-20 | 152 | 211 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10029022 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010147.1 | 1e-64 | PREDICTED: WRKY transcription factor 55-like | ||||
Refseq | XP_012091129.1 | 6e-65 | WRKY transcription factor 55 | ||||
TrEMBL | S5CH76 | 1e-63 | S5CH76_JATCU; WRKY transcription factor 55 | ||||
STRING | Lus10029022 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-45 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Lus10029022 |