PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029021
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 294aa    MW: 32773.2 Da    PI: 5.4047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.13.1e-22119180259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                  +Dg +WrKYGqKe+ +++fprsY+rC+ +   gC+++k+v+r +++  ++  itY g+H+++
  Lus10029021 119 QDGQAWRKYGQKEILNAKFPRSYFRCSRKyeqGCKATKHVQRVEQEsAELYSITYVGHHTCS 180
                  79*************************988889*********876526899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-22116180IPR003657WRKY domain
SuperFamilySSF1182903.14E-20116180IPR003657WRKY domain
SMARTSM007744.8E-31118181IPR003657WRKY domain
PROSITE profilePS5081116.444118177IPR003657WRKY domain
PfamPF031061.3E-22119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGSTPFLQTM QRKQQQEVIK ELVQGQKFAA QLQLLLPKND VQSSADELVV KILTSFTHAI  60
SALSADSRDN QDDSSASGLY EDSGESPKRR PSPSGKDNRG SYKRRKSGQC NIIISPTIQD  120
GQAWRKYGQK EILNAKFPRS YFRCSRKYEQ GCKATKHVQR VEQESAELYS ITYVGHHTCS  180
GNVPRTIPSI FPVETENETS ELSLIKNVKE EGCTFVNEDH DIVNNEHSMS GVTNDHSTNM  240
WQDLVPLEPE EAISNHGYNS YCGYDGGASS SSQILDLDFL VKNVDFENGF GFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-21111179168OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187105KRRPSPSGKDNRGSYKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100290210.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-44WRKY DNA-binding protein 70