PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 21568.6 Da PI: 7.8045 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lus10028997 63 FSCNYCRRKFYSSQALGGHQNAH 85 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.39E-6 | 60 | 90 | No hit | No description |
PROSITE profile | PS50157 | 11.136 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MHQPDSRSDS EENEYERTNQ VASLDLSLQL LHSHNNFNES DHHHDEQSNY GESAPRTVPP 60 RVFSCNYCRR KFYSSQALGG HQNAHKRERI IAKRAVRLRV YSRYNMNLGI QAHSASHIFP 120 LQRPPLPPLD HGFGARFERN FYQEEEEVGS YWPGSFRQFA DGRPNYTTTN SVATSSSSSS 180 GLDLTLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028997 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595426.1 | 3e-38 | zinc finger protein 4-like | ||||
Refseq | XP_021595427.1 | 3e-38 | zinc finger protein 4-like | ||||
Refseq | XP_021595428.1 | 3e-38 | zinc finger protein 4-like | ||||
Refseq | XP_021595429.1 | 3e-38 | zinc finger protein 4-like | ||||
TrEMBL | A0A251J6W3 | 7e-37 | A0A251J6W3_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2P2KAK7 | 5e-37 | A0A2P2KAK7_RHIMU; Zinc finger protein 4-like | ||||
STRING | Lus10028997 | 1e-139 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9619 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 6e-27 | zinc finger protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10028997 |