PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028970
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 648aa    MW: 70821.7 Da    PI: 7.1776
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028970genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07253273526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  Lus10028970 253 PCPEFRK-GSCQKGDSCEYAHG 273
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.84E-1360138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00116393IPR002110Ankyrin repeat
PROSITE profilePS5029713.84163138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-1364141IPR020683Ankyrin repeat-containing domain
PfamPF136376.2E-864122No hitNo description
CDDcd002041.23E-1165138No hitNo description
PROSITE profilePS500889.48498133IPR002110Ankyrin repeat
SMARTSM002480.2598130IPR002110Ankyrin repeat
SMARTSM003564.0E-5248274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544248275IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5253273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4253274IPR000571Zinc finger, CCCH-type
SMARTSM00356100283306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568283307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MVVEQSSFRQ KASNLGRCSV LLELSAIGDL VSFRSEVEGK GLDVDEASCW YGRRIGSRKM  60
GFEERTPLMI AAMFGSTDVL KYIIGTGKVD VNRACGSDMV TALHCAVAGG SNSSVAIVKT  120
LLDADADSNC LDANGNKPED LFAPAMKCPC NSRKKLIESL LKGESLSEDE EEKLIALPQF  180
AKEGIERKEY PIDVSLPDIN TGVYGSDEFR MYSFKVKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYPYS CVPCPEFRKG SCQKGDSCEY AHGVFESWLH PAQYRTRLCK DEPGCARKVC  300
FFAHKPEELR PVYASTGSAM PSPRSSGSAA SAMDMASLSP LSLGTTSLPT AVSTPPMSPH  360
ASSSPKSGGL WQNKINFTPP ALQLPGSRLK TAMSARDFDL ELELLRLENH NNQMQQQQLI  420
DEITGLSSSP TRWSQDFNRM GEMKPTNLDD AFRSLDPSLF SPMQQQSPTG MQIRQNMNQL  480
RSSFPSNLSS SPVRKQQGGG SYGFESSAAA AMNARSSAFS NRSQSFIDRG AVSVNRLGVT  540
AAANSVSMMS SNWGSPGGKL DWGMQGDELN KLKRSASFGF RGGNNNSSPV TRPADVAMSN  600
GQEPDISWVN SLVKDAPENR HSHVNGVRES IPPWMEQMYM EQEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028970
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021670068.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A067LJF00.0A0A067LJF0_JATCU; Uncharacterized protein
STRINGLus100289700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein