PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028951
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 334aa    MW: 37490.9 Da    PI: 7.9062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028951genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029218239223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC++C k F+++  L +H r +
  Lus10028951 218 KCEKCMKQFRSPKALISHRRIC 239
                  8*******************87 PP
2zf-C2H212.70.00039262284123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F +   L  H r+H
  Lus10028951 262 FQCPYCFKVFGSGQALGGHKRSH 284
                  89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.19E-7428No hitNo description
PfamPF139123.6E-6528IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203629IPR007087Zinc finger, C2H2
SMARTSM003550.12628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-7212238No hitNo description
PROSITE profilePS501578.704217246IPR007087Zinc finger, C2H2
SMARTSM0035521217237IPR015880Zinc finger, C2H2-like
PfamPF139120.05218237IPR007087Zinc finger, C2H2
SuperFamilySSF576672.84E-5258288No hitNo description
PfamPF139125.3E-11262286IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803262289IPR007087Zinc finger, C2H2
SMARTSM003550.071262284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MESRRHKCKL CFRAFPNGRA LGGHMKSHSF LHSTFPLPPP RRNQLGHDPD ATESSSSSSS  60
YSSSEDETEL KLQSIVKSDD VVYGLRENPR KSFRVADPEF SFAGSSSALV QDRGSECAES  120
RNPATRRRSK RKFRKPWANS DSPVSSVSSD AADEDVAMCL VMLSRDVNNW RMMKKQRFDN  180
NVDDVGFDNL KKNDEEINEE EEEEVHEMRG ICGKKKLKCE KCMKQFRSPK ALISHRRICS  240
LNNNKGNHHH LRKLISDEER IFQCPYCFKV FGSGQALGGH KRSHLSSRTG SYPSAVDPPP  300
PSPSPPPSCS LWDLNLPAAV EEDDEEFSVV SDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131RRRSKRK
2126134RRSKRKFRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028951
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690429.12e-83zinc finger protein ZAT4-like
TrEMBLA0A2C9WDA09e-76A0A2C9WDA0_MANES; Uncharacterized protein
STRINGLus100289510.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-17C2H2-like zinc finger protein