PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028950
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 847aa    MW: 92230.1 Da    PI: 8.8243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028950genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07516536525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C+ +  tG+C +G++C F+H
  Lus10028950 516 PCDKYKTTGFCIRGEKCLFSH 536
                  7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-5457482IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61457484IPR000571Zinc finger, CCCH-type
SMARTSM003560.003458483IPR000571Zinc finger, CCCH-type
SMARTSM003560.69486512IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.948486510IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.31511539IPR000571Zinc finger, CCCH-type
SMARTSM003560.25514538IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6515544IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5516536IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4516537IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MEQQQRQLVE IPDAFNPRRK PLLKSETYFS LLRLFSFCDN QLPPLVVKPG SNSSDEADRK  60
ACVQVGGSDG DCLAQKSKAH DQTFECLGQR GFSETKVLID EIECIMTVDE DEDQLTHNCS  120
VLDKIMELDH AIKGNDDFRV DCNEIRGVTA GERTCLDSHP LCESRIVSEQ TIQEEGSIRD  180
VSKLLDSKVA RASQESGSKL KEIITLEKSS IAMVCSNGMV VGDQAEEGEI YVDYRIGEGA  240
DLKSCKDNRK LQGIKLDEKH LSSHVLDGTG CRKQSASSAT PGNQFPSSSR ADGVANLNNG  300
YGNKDKIDIP MVSNRKTVVY DDLLFTEGPE MWQEGKKGDR AKGQRINSET AGRNNNNNRG  360
GEVGKVKGHA EQNKGSVVKV DARYADMSVE KSSQNPSTSQ VSACGDKQDG SLCKNKKRGP  420
LTDARKESRK RNKRKKRAET NKEHGVKRLK LQPVSNQKPA AVCRHYMMGR CQEDEKCKFS  480
HDAIPLTKSK PCSHFARDQC IKMDKCPYDH QLSKYPCDKY KTTGFCIRGE KCLFSHKDLP  540
NEEVSTVGSA KPKSSVLTGN VGTKRKLDIV DNLHPKRESL SVPAAVAPAK IQQVGRKDVL  600
NALGIAPTGI AGKSLVGVSN CTLQGPSSVA TKDALNINHT DQHLSGLADK SNTPLKGTPP  660
AATPKGINFL SFGKSPLLLS AAKQSSVKPI SFDGSLKPPL SKMSSPYKQV SDAGGVKRPS  720
EFNVIIPKTN EMAHRTGHVT ESPKHDTLFL RVTSADDCNR HIQAHLPSSS HGGTSITGEG  780
SKTAYDKHHS LNATLQGLLS SSSDSGQSSG HRELLQLKYV PNSVQDSLMS MLAFAAKVDS  840
DMKKKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415436KKRGPLTDARKESRKRNKRKKR
2428449RKRNKRKKRAETNKEHGVKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100289500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323