PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028845 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YB | ||||||||
Protein Properties | Length: 254aa MW: 27971.1 Da PI: 6.7932 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.3 | 4.6e-53 | 27 | 122 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqd+++Pianv+rim+++lP +akis+daket+qecvse+isfvt+ea+++cqre+rkt+++dd+lwa+++lGf++yvepl++yl++yre+eg++ Lus10028845 27 REQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTVTADDVLWAMGKLGFDNYVEPLSLYLARYRETEGDR 122 89********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.3E-48 | 25 | 126 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.24E-35 | 29 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-25 | 32 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.0E-16 | 60 | 78 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 63 | 79 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.0E-16 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 5.0E-16 | 98 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MNPPPRQQQN PPPPGGGGGR GRPLQLREQD QYMPIANVIR IMRRILPPHA KISDDAKETI 60 QECVSEYISF VTGEANERCQ REQRKTVTAD DVLWAMGKLG FDNYVEPLSL YLARYRETEG 120 DRAAYRDPNL LLKRSAAAAH HDHHRQDFGP SMIMPPAAPP LAPNFQMQQQ CHNTNFQMQQ 180 QGPNGNFQMQ QQGDHNNNIN QGMYDAAAAA GGYYREPLLL GSGSGQGSHS GAGGGEDGGA 240 GMPNFDHLYS QFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-58 | 21 | 117 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028845 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ902252 | 1e-128 | HQ902252.1 Linum usitatissimum cultivar CDC Bethune putative beta-galactosidase (Bgal1) and putative glycosyl transferase family 1 protein genes, complete cds; putative SUMO-activating enzyme 1A transcript gene, complete cds, alternatively spliced; putative transcription factor H2A superfamily proteins, putative protease, and hypothetical protein genes, complete cds; and putative ATP-binding cassette transporter gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021669717.1 | 1e-65 | nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | F6LC75 | 1e-114 | F6LC75_LINUS; Putative transcription factor H2A superfamily protein | ||||
STRING | Lus10028845 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 4e-58 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Lus10028845 |