PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028575
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 279aa    MW: 31053.7 Da    PI: 6.5369
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028575genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-12196250357
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                  + +r++r++kNRe+A rsR+RK+a++ eLe  + +Le+e ++L ke ee  ke  
  Lus10028575 196 AQQRQKRMIKNRESAARSRERKQAYQVELESLAVKLEEEHEQLLKEREERAKERL 250
                  679*****************************************99998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-11191256No hitNo description
SMARTSM003388.2E-10194258IPR004827Basic-leucine zipper domain
PfamPF001703.6E-11196249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.404196248IPR004827Basic-leucine zipper domain
CDDcd147079.62E-15198244No hitNo description
SuperFamilySSF579593.46E-8199246No hitNo description
PROSITE patternPS000360201216IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MATSKVISSS KAMSSSSKPK DSDPSASFSS EAARSHRFSS SDHHRITTNT GNGLSTAMTV  60
DGVLRSVYSA PPHPLSESAL PNDHLSLITS NENGFAPSKT ADDIWRDIVS TGRKELKEEE  120
PDEMMTLEDF LAKAGTCEEE DGEDNEVKMI PMLSFDSANA IQMLDKVEGS IVGLGNSGRG  180
KRGRGPAMEQ QLDKAAQQRQ KRMIKNRESA ARSRERKQAY QVELESLAVK LEEEHEQLLK  240
EREERAKERL KQIMENVVPV EERGRPPRKL QRARSWTW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028575
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8309590.0EU830959.1 Linum usitatissimum clone LU0019G07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266826.19e-77PREDICTED: G-box-binding factor 4
SwissprotP427771e-52GBF4_ARATH; G-box-binding factor 4
TrEMBLF6GY422e-75F6GY42_VITVI; Uncharacterized protein
STRINGLus100285750.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.19e-49bZIP family protein