PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028550
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 363aa    MW: 40101.8 Da    PI: 5.0691
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028550genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.11.3e-33155247298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lfqrlw+++Dei+lL G+i+f++k+ ++p+ d+ +f++f+kks+s++vs+sql eKi rL++Kf k  +    g+++sfsk+hd+++f+lskkiWg+
  Lus10028550 155 LFQRLWNDDDEIALLSGMIEFTEKKRVDPTRDLAGFHDFIKKSLSVEVSQSQLKEKIGRLRRKFAKANE----GEDKSFSKAHDREVFDLSKKIWGT 247
                  79**************************************************************87655....59********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.3E-30156246IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAPKPAKEDP PAASYSEEEA SSDEEETETS GGEPQSTQKK PALQKPEESF SALRSESEEE  60
VSESESEPED GSDTDSDLKT VAAVGQNVKP TASKPMEDSQ AKSSKPKAKP APATPVSKLT  120
AATTGKRAAA GGETEESKDV KRRKEENTED TKKQLFQRLW NDDDEIALLS GMIEFTEKKR  180
VDPTRDLAGF HDFIKKSLSV EVSQSQLKEK IGRLRRKFAK ANEGEDKSFS KAHDREVFDL  240
SKKIWGTSKK QAEPSNRKAK VVNNGDSSKL AAIKADLGIG NGKEDKMEIE KHEPLKGNFN  300
MDWFEDMGKF VVTKGLDYVE GSKRGELEKR WKEVKVASLN LLVKQSQLMI DQAKLMLDAM  360
ED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143KDVKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690494.11e-74GLABROUS1 enhancer-binding protein-like
RefseqXP_021690495.11e-74GLABROUS1 enhancer-binding protein-like
RefseqXP_021690496.11e-74GLABROUS1 enhancer-binding protein-like
STRINGLus100285500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-28DNA-binding storekeeper protein-related transcriptional regulator