PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028352
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 337aa    MW: 35053.3 Da    PI: 8.4076
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028352genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702208.41.8e-641122564153
       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101
                  g++sCqdCGnqakkdC+h+RCRtCCksrg++C+thvkstWvpaakrrerqqq++  +s ++ ++      ++++   k+   ++s++l+s+ +  e+ 
  Lus10028352 112 GGISCQDCGNQAKKDCSHSRCRTCCKSRGYNCQTHVKSTWVPAAKRRERQQQQHPVTSVQQPHQ------QQHQVVPKRPRDTTSSTLVSHPPGLEVA 203
                  789**********************************************999988766553332......22333344444556677788889999** PP

       DUF702 102 tsslPeevsseavfrcvrvssvddgeee.laYqtavsigGhvfkGiLydqGle 153
                  + ++P+evssea+ rcvr+s+vd+++++ +aYqtavsigGh+fkGiLydqG++
  Lus10028352 204 VGNFPAEVSSEALLRCVRMSGVDESDAQqYAYQTAVSIGGHTFKGILYDQGPA 256
                  ************************77655**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.3E-61113255IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.1E-27115157IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-24207255IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGGGRGSS GNTNNNNTEI TPESNNNRQQ QQQAELMQRH QDLYSSAAGL  60
GVGPTHHHLY LSADHHHHHP SSSRSAAALM MMRPGGGEGG RGSSSSISNV GGGISCQDCG  120
NQAKKDCSHS RCRTCCKSRG YNCQTHVKST WVPAAKRRER QQQQHPVTSV QQPHQQQHQV  180
VPKRPRDTTS STLVSHPPGL EVAVGNFPAE VSSEALLRCV RMSGVDESDA QQYAYQTAVS  240
IGGHTFKGIL YDQGPAGESS SYMAATTDTS SASGVQPLNL ITTAASASAS ASSNIGGGGV  300
TSNAAGASYL DPSSLYTAVP LSNYMAGTQF FPNNPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028352
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969933.11e-87PREDICTED: protein SHI RELATED SEQUENCE 1
SwissprotQ9SD405e-77SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A061DFV65e-85A0A061DFV6_THECC; Lateral root primordium protein-related, putative
STRINGLus100283520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-64Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]