PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028175
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 486aa    MW: 53307.4 Da    PI: 9.426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028175genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.2e-16168213555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Lus10028175 168 HNQSERKRRDKINQRMKTLQKLVPSS-----SKTDKASMLDEVIDYLKQLQ 213
                  9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.688163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-19166241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-18168224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.67E-16168217No hitNo description
SMARTSM003532.2E-18169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDALVPCSNV VPTTTNVPQD HHRTKAQRVM ELAAPVAGMV GSARVGSCSG PVGVLENGRR  60
GGGKVAARPE WSGRDQSACG SASLGRDSQR VTLDTCERDG GVGFTSTTSF GSHDDYTRTA  120
ATGTADENDS ACHSRPQARL REGGDDEKKK GNGKSSVSTK RSRAAAIHNQ SERKRRDKIN  180
QRMKTLQKLV PSSSKTDKAS MLDEVIDYLK QLQAQVQMMN RMNMQPAMML PMAMQQQLQM  240
SMMTPMNIGM GMGMGMGMLD MSSMARPAAL PQLLHQTHPF MPSWDGGLSA AAAAADRLHS  300
APSAITPDPL SAFFASQSQQ QQQQPAMNMD AYSRMAALYQ QLHQKPPGSG SKNFFFMFQQ  360
AAAAAGHEHG CIQQNGCIVP TASSEAAWIW FQELEPAHHL IRDTRMITEW LAKERLNSLS  420
TEVHRQALLE TENNIVKLEL VLQTIRTSST VDRGKRIENL FQHYGFGRGE TLNAIYEKWT  480
RRDRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRD
2172177RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028175
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582839.11e-123transcription factor UNE10
SwissprotQ8GZ383e-70UNE10_ARATH; Transcription factor UNE10
TrEMBLB9RD581e-119B9RD58_RICCO; DNA binding protein, putative
STRINGLus100281750.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]