PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028166
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 581aa    MW: 63159.2 Da    PI: 6.1657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028166genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16223259135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp+g+++LCnaCGl+y+ kg+
  Lus10028166 223 CTHCGISSklTPMMRRGPSGPRSLCNACGLFYANKGV 259
                  ******999*************************997 PP
2GATA49.27.3e-16469505135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Lus10028166 469 CQHCGVSEknTPAMRRGPAGPRTLCNACGLMWANKGT 505
                  *******999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.63587122IPR010399Tify domain
SMARTSM009791.5E-987122IPR010399Tify domain
PfamPF062005.1E-1191121IPR010399Tify domain
PfamPF062035.8E-15155197IPR010402CCT domain
PROSITE profilePS5101712.65155197IPR010402CCT domain
SMARTSM004018.1E-15217270IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.686217276IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-12219269No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15222264IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440223250IPR000679Zinc finger, GATA-type
CDDcd002022.31E-14223269No hitNo description
PfamPF003201.9E-14223259IPR000679Zinc finger, GATA-type
PROSITE profilePS5132011.444327362IPR010399Tify domain
SMARTSM009791.2E-6327362IPR010399Tify domain
PfamPF062008.0E-9331361IPR010399Tify domain
PROSITE profilePS5101712.65397439IPR010402CCT domain
PfamPF062031.9E-14397438IPR010402CCT domain
PROSITE profilePS501148.972463520IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-10463516IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14467510IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.9E-11467515No hitNo description
CDDcd002022.30E-15468515No hitNo description
PROSITE patternPS003440469496IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13469505IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MISGPQQFTA MYSHSPSVDI PHQIDVVPGS GEDNDPSGAP DCMGQQSHIG YDDGSVAATG  60
IMVDDMSPDS VYASACGGPG SEFGFQGGDI SNQLTLTFRG QVYVFDDITP DRVQAVLLLL  120
GGCEVNSGLY GMDGAPQSQR DPVMEYPGRS TQPHREASLN RFRQKRKERC FDKKVRYGVR  180
QQVAQRMHRK KGQFTSAKQP DGTDGGDGSQ DSGHDDSQQE IYCTHCGISS KLTPMMRRGP  240
SGPRSLCNAC GLFYANKGVL RDLSKKNQDH GTVPVEQLED ANDDCDDPMD DDVELPHVNS  300
DINDVAGLRT EAVVGGRSSS GGAAMASRRR SSELTLSFEG EVYVFPAVSP EKVHAVLLLL  360
GRQDVPPPVV PGFEVPFDHQ SNRAMGDSPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT  420
VRKEVAQRMH RKNGQFASLK ENSGGSSYDT AQSFPQDGNS VLETALRRCQ HCGVSEKNTP  480
AMRRGPAGPR TLCNACGLMW ANKGTLRDLS KGGRSLPADQ VEPETPVDLK PTLAEGDMQV  540
IGDVTGGSSS NPINQDQEEA FVKHTNNPSD TYLDPPPNFD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386391DSPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023538549.11e-120GATA transcription factor 24-like isoform X2
SwissprotQ9LRH68e-71GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1Q3BG010.0A0A1Q3BG01_CEPFO; GATA domain-containing protein/tify domain-containing protein/CCT domain-containing protein
STRINGLus100281660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.28e-66GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]