PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10028102

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 299aa MW: 33830 Da PI: 6.5669

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10028102	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.5	4.2e-30	100	154	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+ F eav+ LGG+++AtPk+il +m+v+gL ++hvkSHLQkYRl Lus10028102 100 KQRIRWTTELHDLFFEAVTTLGGPDVATPKRILSIMNVEGLNIYHVKSHLQKYRL 154 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.738	97	157	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-28	98	158	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-17	98	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	100	155	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-7	104	153	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-14	185	230	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MPPLVLDDHS MKKLEDLLHM TEENSNFHPL MHPHDVVSMT LKETMGYLSK ELDIPLDDVV 60 DNNDKPAGLE EIFEQPTAGN KDDYMSGSSH QNSEGAASHK QRIRWTTELH DLFFEAVTTL 120 GGPDVATPKR ILSIMNVEGL NIYHVKSHLQ KYRLQTQEKR IPSAVEKKCD SSNNDNQVNM 180 NRDMVVTTAL QMQIDVQKLL HDQLKAQKLL QLRIEQNGEF LKKLLGEEQK ITPRSRLNSP 240 SSSTQQMDLS HFADVSSPSP QNSAPFTVTT RNNSSQLSSN HQTDSTHSKC HKRLRDDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	100	153	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10028102

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600079.1	8e-61	myb family transcription factor PHL6-like
Refseq	XP_021600080.1	8e-61	myb family transcription factor PHL6-like
TrEMBL	A0A251ITK9	2e-59	A0A251ITK9_MANES; Uncharacterized protein
STRING	Lus10028102	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17035	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	4e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10028102