PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028100
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 413aa    MW: 44570.6 Da    PI: 7.8233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028100genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11427226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k+e+Cr+f+r G C+yG+rC++ H+
  Lus10028100  4 KREPCRNFQR-GSCQYGERCRYLHV 27
                 89********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-6228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.793229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5329IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MPVKREPCRN FQRGSCQYGE RCRYLHVVQQ QPKQSNPFGF GSGQQQQQKQ QQSSNPFGFG  60
AKQQQFKPFE NRWSRSNPSD NGAGHVPSSS KHQPDSKSQV ANHTCTDPES CKRSIAEDFE  120
HERPIWKLTC YGHARNGPCD IVGDISYEEL RAAAYEDVKY GINVQSIIER ERNLSNSKLV  180
EFQNLLQTPY VARSGSAVGM HGTTTNEISP TSSSSAPLQV SSFSQLSPSL NTGFGARPSG  240
QVTNNVPNQP NALSNSFPTL NPFGVGPPSQ VNNLFGQPSV FPNATQNAGV FGTNNIASAN  300
GPFGGQLDGQ HHRSSFPNVA GFPTSSGVSS GGSNLFSSSQ SFTAQNPISS NLNAETSSSL  360
AVNSVEKEKA SPDRSIWSKE TWKPGEIPEE AGGGGLERGR LWRRGGGEEE EQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689230.11e-127zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBLA0A067K7I71e-115A0A067K7I7_JATCU; Uncharacterized protein
STRINGLus100281000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-58C3H family protein