PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028083
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 447aa    MW: 48263 Da    PI: 9.4285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028083genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05192214223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   CpdCg+ F   ++L+ H+ + H
  Lus10028083 192 ACPDCGQIFMKAESLELHQAVkH 214
                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787191219IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-16216444No hitNo description
Gene3DG3DSA:3.90.228.101.5E-14217443IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAIWKTPKKT TTETHQNKNK NKRQSSQQQQ IQKPENKPPS SSSSSWKGIF SCKDLQTHNQ  60
ILNQLDEPPV TPTSKKSKKL KCSGSLCSNT KVMQYRPAEL IGSSTSTTNT SGTSTIMLGS  120
SSRSMRPPVS SDVAVSSNGG RRGVVSGSSY STFKGMPFSR FSGCYECRMV VDPVLGGLGG  180
KDSSGLRNSI CACPDCGQIF MKAESLELHQ AVKHAVSELG PEDTSKNIVE IIFQSSWLKM  240
ESPICKIDRI LKVHNTQTTI AKFEEYRDSI KSKATNLFPK KHPRCIADGN ELLRFHSTTF  300
VCSLGLNGSS NLCSGRCNVC SIIKNGFTTG TGGTIGILTT ATSGKAHDNA IGTTVVGVEK  360
AEKRAMLVCR VIAGRVMKKN ASTLGTIKNS QVQRDDEEGE VGRGEGRKEY DSVAGGDVGV  420
YSNLDELYVF NPMAILPCFV VIYCGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028083
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366983.11e-157PREDICTED: uncharacterized protein LOC103956687
TrEMBLA0A498HYJ41e-157A0A498HYJ4_MALDO; Uncharacterized protein
STRINGLus100280830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-72C2H2-like zinc finger protein