PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027942
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 279aa    MW: 32269.5 Da    PI: 9.6756
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027942genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.4e-1112100190
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  ffkv +p+  + +  ++lp++f+++++ +  ++ +ltle  +g++W+v l   +++ +r++l +G ++F +   +  + +++F++ + s+ 
  Lus10027942  12 FFKVILPETIHHKE-MMLPRRFMKNFKAE-FSGSELTLEVADGKTWTVGLEEeEGHLNRVWLVSGFEDFLRFYSISPKQILLFRYLKPSRL 100
                  78888777666665.********777544.56669***************556777788*************************9875554 PP
2B339.31.1e-12174266593
                  -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   + s++ + g+++lp +f+++  + +   s+t +l+  +g      +W ++++  ++++     +GW++F ++n+L egD+++F+l+ rse+e +
  Lus10027942 174 VIASYHIRPGNMYLPVNFTKKLcSRD--DSTTARLKLYEGtdqvvGEWPIEFNKLRSQRNQKNVTGWNKFRRENELVEGDVCLFELIPRSEGEIL 266
                  678999999**********9998333..34456665555556899*******7755555566667**********************88555433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-159106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.4611108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-1611107IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-612109IPR003340B3 DNA binding domain
PfamPF023622.7E-812101IPR003340B3 DNA binding domain
CDDcd100175.89E-1212105No hitNo description
SuperFamilySSF1019361.43E-11165266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-10166272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997170273IPR003340B3 DNA binding domain
SMARTSM010190.0013171271IPR003340B3 DNA binding domain
CDDcd100171.46E-9173274No hitNo description
PfamPF023626.9E-11173266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSAANKFPFL QFFKVILPET IHHKEMMLPR RFMKNFKAEF SGSELTLEVA DGKTWTVGLE  60
EEEGHLNRVW LVSGFEDFLR FYSISPKQIL LFRYLKPSRL KVFILHSTSM EITYPPLAPA  120
PDSDELLDRL KKMKKMQLSN KFNLAFETMS TNSKRAVERA LEEMNPANIS TLVVIASYHI  180
RPGNMYLPVN FTKKLCSRDD STTARLKLYE GTDQVVGEWP IEFNKLRSQR NQKNVTGWNK  240
FRRENELVEG DVCLFELIPR SEGEILLLKV RIVRAAAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100279420.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-14B3 family protein