PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027627
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 474aa    MW: 53449.4 Da    PI: 4.8052
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027627genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.7e-341332242102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk++e++ed e++ ++sws++ +sfvv+d++ef+k +LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+ gkk+ll++ik
   Lus10027627 133 FLKKTFEMVEDLETDPIVSWSKSRDSFVVWDSHEFSKFLLPKYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFQGGKKHLLKNIK 220
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Lus10027627 221 RRSR 224
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-33129222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-57129222IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-36130222IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-18133156IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-30133222IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-18171183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340172196IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-18184196IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MNTVASEVPA ADPKCGISGV VHPLLFAPAE DEEELTTTTS LGEAEEEEKN PPPLLFNGES  60
EAASSSMEKA AEDSVMIQTV LIKQEVEEEE EVCDGVVNYY LKSERRNCNG SSSSSSGFSK  120
PMEGLQDSAL PPFLKKTFEM VEDLETDPIV SWSKSRDSFV VWDSHEFSKF LLPKYFKHSN  180
FSSFIRQLNT YGFRKIDPDR WEFANEGFQG GKKHLLKNIK RRSRYNNNTR HNHDHHYHNH  240
KQQLSIHGGS DLTKPWIETD LDSLRNDHDL LKLEILKLSQ THQDSENQLV AVEERVRAAE  300
YKQIQMFMFF AKATKNPAFI QRLSQRRKLD CRGEMMKRRR LLPTAEINPA PDHHPVDNNN  360
IIINCRNQAR RHLAAMQSEL DQVLPESDTT ATGSVSENGS DDNPEDMVSV YDLMSEDLLD  420
ENPVVESLAD EDLDMNESKL FSELENLLGT TSSRPHSTWS GCVSGLVGNA GCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2212822224129Heat shock factor protein 1
5d5v_B4e-2212822224129Heat shock factor protein 1
5d5v_D4e-2212822224129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221LKNIKRR
2325339RRKLDCRGEMMKRRR
3336340KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076960.11e-121heat stress transcription factor A-2
RefseqXP_021597893.11e-120heat shock factor protein HSF30-like
TrEMBLA0A067KPW61e-120A0A067KPW6_JATCU; Uncharacterized protein
TrEMBLA0A2C9UAL21e-120A0A2C9UAL2_MANES; Uncharacterized protein
STRINGLus100276270.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-70heat shock transcription factor A2