PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027505
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 561aa    MW: 61042.5 Da    PI: 5.6519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027505genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS124.51.2e-382044062198
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++Lle+A a+ +g++e a ++L+rl + ++ +g++ qRl  y+  +L++r++        a +p + ++   +e++ +++l++e+sP++k+++++aN
  Lus10027505 204 RQVLLEAASAIYDGKMESAAEILSRLTK-SNGEGNSEQRLMDYLFSGLKSRVNP-------AENPPPVADLYGKEHAESTQLLFELSPCFKLGFMAAN 293
                  689***********************86.6789********************9.......3344444445699************************ PP

         GRAS 100 qaIleavege......erv.HiiDfdisqGlQWpaLlqaLasRpeg.......ppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlv 182
                   aIlea+ +e      + v H++Dfd+++G+Q+ +Ll aL++R +g       +  ++iT+v+  + + +ke+l+++ge L+++Ae++g++++f+v v
  Lus10027505 294 LAILEAALEEgnnnnkKSVfHVVDFDLGKGGQYKNLLYALSERLNGknpttagAVLVKITAVALDSVEeEKERLNAVGETLRQVAERVGLTLQFKV-V 390
                  ******97665677664556***********************9544445444779*******977668**************************9.6 PP

         GRAS 183 akrledleleeLrvkp 198
                    +l+dl+ e+L v++
  Lus10027505 391 NCNLTDLTRESLGVST 406
                  889*********9986 PP
2GRAS157.31.3e-48404560218374
         GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                  vs+e++rd++L+ vk ++P++v++veqe++ n+++F++r+ ea++yysalf+s+++++p  + er kvE+  lgr++ n +aceg++r+er+e  +kW
  Lus10027505 404 VSTENPRDKLLRRVKAMEPRIVTIVEQEMNANTAPFMTRVNEACKYYSALFESIDSTVP-GEPERGKVEEG-LGRKLANTIACEGRDRVERCEVWGKW 499
                  578999***************************************************85.6799*******.************************** PP

         GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+r+++aGF+  pls k+++ +k  l+  +  + g++v+ee+g +++gW++++L+++SaWr
  Lus10027505 500 RARMGMAGFNMQPLSGKVTELMKVRLESGNrpNPGFTVKEENGGACFGWMGKSLTVASAWR 560
                  ************************9998776799**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.124177538IPR005202Transcription factor GRAS
PfamPF035144.5E-46404560IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MNSLLRSVKP RIYQNNCSGF SGNFANNNNH HNFSAENSFS ALSSQRYGLP LLQQLRPQPI  60
NVLPQQTLQG VPFAQTRTQH NKGVAVGSGG SGGPGQESEK KMMNRLQELE KQLLDDDDEE  120
VEGEEGQSDA VSVITNNTNS EWSETIQNLI TPSSSPIENN NNNVGQNQIS PSPSPSSSSS  180
TTSSSTTTAA TAKPPPSSLA ICSRQVLLEA ASAIYDGKME SAAEILSRLT KSNGEGNSEQ  240
RLMDYLFSGL KSRVNPAENP PPVADLYGKE HAESTQLLFE LSPCFKLGFM AANLAILEAA  300
LEEGNNNNKK SVFHVVDFDL GKGGQYKNLL YALSERLNGK NPTTAGAVLV KITAVALDSV  360
EEEKERLNAV GETLRQVAER VGLTLQFKVV NCNLTDLTRE SLGVSTENPR DKLLRRVKAM  420
EPRIVTIVEQ EMNANTAPFM TRVNEACKYY SALFESIDST VPGEPERGKV EEGLGRKLAN  480
TIACEGRDRV ERCEVWGKWR ARMGMAGFNM QPLSGKVTEL MKVRLESGNR PNPGFTVKEE  540
NGGACFGWMG KSLTVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2420955925378Protein SCARECROW
5b3h_A1e-2420955924377Protein SCARECROW
5b3h_D1e-2420955924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027505
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090206.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-148SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A172MLD40.0A0A172MLD4_LINUS; Putative GRAS domain family protein
STRINGLus100275050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-128SCARECROW-like 8