PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10027404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 21468.3 Da PI: 9.4976 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1e-28 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien++ rqvtfskRrng+lKKA+ELSvLCdaev v++fs++g+lye+ss Lus10027404 3 KIENTTSRQVTFSKRRNGLLKKANELSVLCDAEVGVVVFSQRGRLYEFSS 52 69**********************************************96 PP | |||||||
2 | K-box | 31.9 | 5.5e-12 | 73 | 128 | 5 | 60 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLek 60 s++s+++ +++l+qe+a L ++i+ Lq + R+llGe+Le ++l+e++ ++Le+ Lus10027404 73 SNSSAASCIQQQLKQESASLANKIDLLQASTRRLLGEGLECCTLEEIKDTNDKLET 128 455566667899***************************************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.5E-30 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-29 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.46E-36 | 1 | 65 | No hit | No description |
PROSITE profile | PS50066 | 27.768 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-17 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-17 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.4E-9 | 81 | 130 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRKIENTTSR QVTFSKRRNG LLKKANELSV LCDAEVGVVV FSQRGRLYEF SSHGMDKTIA 60 RYKKYATVEI NRSNSSAASC IQQQLKQESA SLANKIDLLQ ASTRRLLGEG LECCTLEEIK 120 DTNDKLETRE GTARKEGKSV RKGTCGEMPW EPPPSIGGKG KEAVATAGSS NGASNDSSTV 180 VVTTLSIGLP TATHYIGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10027404 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10027404 | 1e-145 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 8e-38 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Lus10027404 |