PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10027395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28027.9 Da PI: 8.7236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.4e-10 | 72 | 122 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ah +Er+RR+++ + Lr+llP+ ++K ++ + A++YIk+Lq Lus10027395 72 IAHRDVERQRRKEMADLHGSLRSLLPShY---IKGKRAASDQMQAAIDYIKELQ 122 58*************************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 3.92E-5 | 50 | 64 | No hit | No description |
PROSITE profile | PS50888 | 12.424 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-11 | 72 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-7 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.78E-7 | 73 | 123 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 73 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF101447 | 3.92E-5 | 140 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MFPHNSKQIS FDPNDSNQEE DPLIFFPSDF TSPFTFNIPP QGHLIFQQPP PPPPPALQDP 60 PPPPPTQNLR NIAHRDVERQ RRKEMADLHG SLRSLLPSHY IKGKRAASDQ MQAAIDYIKE 120 LQRRTTQLGA KRDELKATST ISNTFYAAAN TNHETATSSS RRAITGGVVV LVRRCLIGME 180 VVISGSNIVD HHRVSRVLKL LMEQGLNVLT IDSVRVNDRL IHTIQSEVSE SSPCVDAAEL 240 QRLLMRQLGY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 81 | RNIAHRDVERQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10027395 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10027395 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 5e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10027395 |